View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9290_low_18 (Length: 424)
Name: NF9290_low_18
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 41756949 - 41756554
Alignment:
| Q |
18 |
aaactaatcataactaacttgtaactacctcaaacaatattcaactgatcctaacaattatatgagcaacatttgatcgctattctcctcaatattgaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41756949 |
aaactaatcataactaacttgtaactacctcaaacaatattcaactgatcctaacaattatatgagcaacatttgatcgctattctcctcaatattgaag |
41756850 |
T |
|
| Q |
118 |
atcacgaccacggtaaactttggttagtaagtaattgttcctctcaaatagagaatgcatggactaagatttttaagagatagtgatgtacatacccaat |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41756849 |
atcacgaacacggtaaactttggttagtaagtaattgttcctctcaaatagagaatgcatggactaagatttttaagagatagtgatgtacatacccaat |
41756750 |
T |
|
| Q |
218 |
catggcaagaaagcatgaaatgatcagctccaaggcttcggttccaaaagggatatttttcggaaaccacattgatataatctgtgatggttttccttat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41756749 |
catggcaagaaagcatgaaatgatcagctccaaggcttcggttccaaaagggatatttttcggaaaccacattgatataatctgtgatggttttccttat |
41756650 |
T |
|
| Q |
318 |
gggactaaaatcatgagaatcgcgtacatagacaaattggaccatctttgccacactaaaaggaaggaaaaatacatgtgccttctcggggtctct |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41756649 |
gggactaaaatcatgagaatcgcgtacatagacaaattggaccatctttgccacactaaaaggaaggaaaaatacatgtgccttctcggggtctct |
41756554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 210 - 411
Target Start/End: Complemental strand, 41764699 - 41764498
Alignment:
| Q |
210 |
tacccaatcatggcaagaaagcatgaaatgatcagctccaaggcttcggttccaaaagggatatttttcggaaaccacattgatataatctgtgatggtt |
309 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||| | |||||||||||| |||||||||||||||||| |||||||| || ||| ||| |||| |
|
|
| T |
41764699 |
tacccaatcatggcaagcaagtatgaaatgatcagctccatgacttcggttccaatagggatatttttcggaaaggacattgatgtagtctttgacggtt |
41764600 |
T |
|
| Q |
310 |
ttccttatgggactaaaatcatgagaatcgcgtacatagacaaattggaccatctttgccacactaaaaggaaggaaaaatacatgtgccttctcggggt |
409 |
Q |
| |
|
|||||| | | | || || |||| || |||||||||||| | ||||||||| |||| |||||| ||| |||||||||||||||||||||||| |||| |
|
|
| T |
41764599 |
atccttaagaggtcataagcacgagagtctcgtacatagacataatggaccatcattgctacactataagaaaggaaaaatacatgtgccttctcagggt |
41764500 |
T |
|
| Q |
410 |
ct |
411 |
Q |
| |
|
|| |
|
|
| T |
41764499 |
ct |
41764498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 211 - 387
Target Start/End: Original strand, 26973807 - 26973983
Alignment:
| Q |
211 |
acccaatcatggcaagaaagcatgaaatgatcagctccaaggcttcggttccaaaagggatatttttcggaaaccacattgatataatctgtgatggttt |
310 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||| |||||| | ||||||||| | | || |||||||||||||| |||| |||| |
|
|
| T |
26973807 |
acccagtcatggcaagctagcatgaaatgatcagctccaaggcttctattccaatatggatattttccagcaatgacattgatataatccgtgacagttt |
26973906 |
T |
|
| Q |
311 |
tccttatgggactaaaatcatgagaatcgcgtacatagacaaattggaccatctttgccacactaaaaggaaggaaa |
387 |
Q |
| |
|
| ||||| || | ||| ||| |||| || | || ||| || ||| |||||| | || ||||||| || ||||||||| |
|
|
| T |
26973907 |
ttcttataggtccaaagtcacgagagtcccttaaataaacgaatcggaccaacattaccacactgaacggaaggaaa |
26973983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 36806159 - 36806120
Alignment:
| Q |
210 |
tacccaatcatggcaagaaagcatgaaatgatcagctcca |
249 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36806159 |
tacccaatcatgacaagaaagcatgaaatgatcagctcca |
36806120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 36515067 - 36515106
Alignment:
| Q |
210 |
tacccaatcatggcaagaaagcatgaaatgatcagctcca |
249 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
36515067 |
tacccaatcatgacaagaaagcatgaaatggtcagctcca |
36515106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 2622074 - 2622026
Alignment:
| Q |
27 |
ataactaacttgtaactacctcaaacaatattcaactgatcctaacaat |
75 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||| || |||||||| |
|
|
| T |
2622074 |
ataactaactcgtaactaccttaaacaatattcaactaattctaacaat |
2622026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 2622118 - 2622162
Alignment:
| Q |
19 |
aactaatcataactaacttgtaactacctcaaacaatattcaact |
63 |
Q |
| |
|
|||||||| || ||||||||||||||| | ||||||||||||||| |
|
|
| T |
2622118 |
aactaatcttagctaacttgtaactacgttaaacaatattcaact |
2622162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 35521668 - 35521624
Alignment:
| Q |
19 |
aactaatcataactaacttgtaactacctcaaacaatattcaact |
63 |
Q |
| |
|
|||||| |||||| || |||||||||||| ||||||||||||||| |
|
|
| T |
35521668 |
aactaaccataaccaatttgtaactacctaaaacaatattcaact |
35521624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 37214284 - 37214236
Alignment:
| Q |
26 |
cataactaacttgtaactacctcaaacaatattcaactgatcctaacaa |
74 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||| ||||| || ||||||| |
|
|
| T |
37214284 |
cataactaacttttaactaccttaaacaatatccaactaattctaacaa |
37214236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University