View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_low_2 (Length: 715)
Name: NF9290_low_2
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 671; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 9 - 699
Target Start/End: Original strand, 51214285 - 51214975
Alignment:
| Q |
9 |
agcagagacgcaaaggtttgtgccttacacaatgtgcttcaattgtgtcacaatgcatttttgtctctaaatttatttagtacatattttgtttctatat |
108 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51214285 |
agcacagacgcaaaggtttgtgccttacacaatgtgcttcaattgcgtcacaatgcatttttgtctctaaatttatttagtacatattttgtttctatat |
51214384 |
T |
|
| Q |
109 |
gaaatttgtactaatcttcatttgacatgatgtttctatgctctaaatatgtttcacagaaactatacgaggaagcaagtcaagtagcaaacgatgcagt |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
51214385 |
gaaatttgtactaatcttcatttgacatgatgtttctatgctctaaatatgtttcacagaaactatacgaggaagcaagtcaagtagcgaacgacgcagt |
51214484 |
T |
|
| Q |
209 |
agggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaattataccagaagaaatgtgtagtaccattccagacaggaaaaaggcag |
308 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51214485 |
agggaatatcagaacagtttctgctttctgtgccgaagagaaagtgatggaattataccagaagaaatgtgtagtaccattccagacaggaaaaaggcag |
51214584 |
T |
|
| Q |
309 |
ggtttagtcagtggaactggttttgggttagcaatcttctttctgttttgtgtctatgcaatcagtttttatgctggcgcccaacttattgagaatggca |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51214585 |
ggtttagtcagtggaactggttttgggttagcaatcttctttctgttttgtgtctatgcaatcagtttttatgctggcgcccaacttattgagaatggca |
51214684 |
T |
|
| Q |
409 |
aaacttcgatgtcaggagtttttcaagtaagttacggtcccaactcggaggccatttcagatatagtgctctttggttgaactctgagctcatcacattc |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51214685 |
aaacttcgatgtcaggagtttttcaagtaagttacggtcccaactcggaggccatttcagatatagtgctctttggttgaactctgagctcatcacattc |
51214784 |
T |
|
| Q |
509 |
ttttagcattaaacatttaatttcttttcaggtatttttctctctcacaacggcagctgtcgcattatctcaatccggcttcatggctccaggagctagt |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51214785 |
ttttagcattaaacatttaatttcttttcaggtatttttctctctcacaacggcagctgtcgcattatctcaatccggcttcatggctccaggagctagt |
51214884 |
T |
|
| Q |
609 |
aaagccaaaagttcagctgcttcagtatttgctattcttgatcagaaatcaaaaatagataccagtgatgaatcaggaatgatactggaag |
699 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51214885 |
aaagccaaaagttcagctgcttcagtatttgctattcttgatcagaaatcaaaaatagataccagtgatgaatcaggaatgatactggaag |
51214975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 164 - 265
Target Start/End: Complemental strand, 29935578 - 29935477
Alignment:
| Q |
164 |
acagaaactatacgaggaagcaagtcaagtagcaaacgatgcagtagggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaatta |
263 |
Q |
| |
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||||||| | |||||||||||||||||||| ||||| ||||| |||||| ||| |||||||||||| |||||||||| ||||||||||||||||||||| |
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|
| T |
29935578 |
acagaaattgtacgaggaagcaagtcaagtggcaaatgatgcggtagggtgtataagaacagtttcttctttctgtgctgaagagaaggtgatggaatta |
29935479 |
T |
|
| Q |
264 |
ta |
265 |
Q |
| |
|
|| |
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|
| T |
29935478 |
ta |
29935477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 177 - 265
Target Start/End: Original strand, 51201393 - 51201481
Alignment:
| Q |
177 |
gaggaagcaagtcaagtagcaaacgatgcagtagggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaattata |
265 |
Q |
| |
|
||||||||||||||||| || || ||||||||||||| ||| ||||||||| || |||||||| | ||||||||||||||||||||||| |
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| T |
51201393 |
gaggaagcaagtcaagtggcgaatgatgcagtagggagtataagaacagttgcttctttctgttctgaagagaaggtgatggaattata |
51201481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 164 - 265
Target Start/End: Original strand, 51147431 - 51147532
Alignment:
| Q |
164 |
acagaaactatacgaggaagcaagtcaagtagcaaacgatgcagtagggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaatta |
263 |
Q |
| |
|
||||||| | |||||||||||||||||||| ||||| ||||| ||||||| ||| ||||| ||||| |||| ||||| || |||||||||||||||||| |
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|
| T |
51147431 |
acagaaattgtacgaggaagcaagtcaagtggcaaatgatgctgtagggagtataagaactgtttcctctttttgtgctgaggagaaggtgatggaatta |
51147530 |
T |
|
| Q |
264 |
ta |
265 |
Q |
| |
|
|| |
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|
| T |
51147531 |
ta |
51147532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 51158602 - 51158701
Alignment:
| Q |
180 |
gaagcaagtcaagtagcaaacgatgcagtagggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaattataccagaagaaatgtg |
279 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||| || ||||||||| || |||| ||||| ||| ||||||| |||||||||||| || | ||||||| |
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|
| T |
51158602 |
gaagcaagtcaagtggcaaatgatgctgtagggagcataagaacagttgcttctttttgtgctgaaaagaaggtaatggaattatacaagcaaaaatgtg |
51158701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 625 - 699
Target Start/End: Complemental strand, 29934767 - 29934693
Alignment:
| Q |
625 |
ctgcttcagtatttgctattcttgatcagaaatcaaaaatagataccagtgatgaatcaggaatgatactggaag |
699 |
Q |
| |
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|||||||| ||||||| |||||||||||||| ||| |||||||| | ||||||||||| || |||| |||||||| |
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|
| T |
29934767 |
ctgcttcaatatttgcaattcttgatcagaagtcacaaatagattctagtgatgaatctgggatgacactggaag |
29934693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 615 - 699
Target Start/End: Original strand, 51148353 - 51148437
Alignment:
| Q |
615 |
aaaagttcagctgcttcagtatttgctattcttgatcagaaatcaaaaatagataccagtgatgaatcaggaatgatactggaag |
699 |
Q |
| |
|
|||||| | |||||||| |||||||||||||||||||||| ||| ||||||| | ||||||||||| || |||| |||||||| |
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|
| T |
51148353 |
aaaagtgctgctgcttccatatttgctattcttgatcagaagtcacaaatagactctagtgatgaatctggcatgacactggaag |
51148437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 625 - 699
Target Start/End: Original strand, 51159255 - 51159329
Alignment:
| Q |
625 |
ctgcttcagtatttgctattcttgatcagaaatcaaaaatagataccagtgatgaatcaggaatgatactggaag |
699 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||| ||||||| | |||||||||| || |||| |||||||| |
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|
| T |
51159255 |
ctgcttccatatttgctattcttgatcagaagtcacaaatagaccctggtgatgaatctggcatgacactggaag |
51159329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 74 - 442
Target Start/End: Complemental strand, 49735760 - 49735391
Alignment:
| Q |
74 |
tctaaatttatttagtacatattttg-tttctatatgaaatttgtactaatcttcatttgacatgatgtttctatgctctaaatatgtttcacagaaact |
172 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||| |||| |||||||||| |||||||||||||||| |||||||||| |||||||| |||||||| |
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| T |
49735760 |
tctaaatttatttagtacatattttgctttatatatttaattagtactaatctccatttgacatgatgttactatgctctatatatgtttgacagaaaca |
49735661 |
T |
|
| Q |
173 |
atacgaggaagcaagtcaagtagcaaacgatgcagtagggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaattataccagaag |
272 |
Q |
| |
|
|| |||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||| |
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|
| T |
49735660 |
gtatgaggaagcaagtcaagtagcgaatgatgcagtagggaatatcagaacagtttccgctttctgtgctgaagagaaggtgatggagttataccaaaag |
49735561 |
T |
|
| Q |
273 |
aaatgtgtagtaccattccagacaggaaaaaggcagggtttagtcagtggaactggttttgggttagcaatcttctttctgttttgtgtctatgcaatca |
372 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||| |||| |||||| ||||||||| ||| ||||||||||| |||| ||||| |||||| || |
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|
| T |
49735560 |
aaatgtgtagtaccagtacagacaggaaaaaggcagggtatagttagtggagttggttttggcttatcaatcttctttatgttctgtgtttatgcatgca |
49735461 |
T |
|
| Q |
373 |
gtttttatgctggcgcccaacttattgagaatggcaaaacttcgatgtcaggagtttttcaagtaagtta |
442 |
Q |
| |
|
||||||||||||| || |||||| || ||||||||||||| || || |||| ||||||||||||||||| |
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|
| T |
49735460 |
gtttttatgctggagcacaacttgttaagaatggcaaaacctcaatatcagatgtttttcaagtaagtta |
49735391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 498 - 699
Target Start/End: Complemental strand, 49735215 - 49735010
Alignment:
| Q |
498 |
tcatcacattcttttagcattaaacatttaatttc----ttttcaggtatttttctctctcacaacggcagctgtcgcattatctcaatccggcttcatg |
593 |
Q |
| |
|
|||||||||| || |||||| || ||||||||||| ||||||||| |||||||||||||||| |||||| |||||| || ||||||| || |||||| |
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|
| T |
49735215 |
tcatcacattgttctagcatcaagcatttaatttcctaattttcaggtgtttttctctctcacaatggcagccgtcgcaatagctcaatctggattcatg |
49735116 |
T |
|
| Q |
594 |
gctccaggagctagtaaagccaaaagttcagctgcttcagtatttgctattcttgatcagaaatcaaaaatagataccagtgatgaatcaggaatgatac |
693 |
Q |
| |
|
||| ||||||||||||||| ||||| || | |||||| |||||||||||||||||||| ||||||||||||| | ||||| ||||||||||||| | |
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|
| T |
49735115 |
gctgtaggagctagtaaagcaaaaagctctgttgcttctatatttgctattcttgatcaggaatcaaaaatagactctagtgaagaatcaggaatgacat |
49735016 |
T |
|
| Q |
694 |
tggaag |
699 |
Q |
| |
|
|||||| |
|
|
| T |
49735015 |
tggaag |
49735010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 279
Target Start/End: Original strand, 36287746 - 36287848
Alignment:
| Q |
177 |
gaggaagcaagtcaagtagcaaacgatgcagtagggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaattataccagaagaaat |
276 |
Q |
| |
|
||||||||||||||||| ||||| ||||| || | || || ||||||||| || |||||||||| ||||||||||| ||||| || ||||| || |||| |
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|
| T |
36287746 |
gaggaagcaagtcaagtggcaaatgatgctgtgagtaacattagaacagttgcttctttctgtgctgaagagaaggttatggacttgtaccaaaaaaaat |
36287845 |
T |
|
| Q |
277 |
gtg |
279 |
Q |
| |
|
||| |
|
|
| T |
36287846 |
gtg |
36287848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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