View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_low_22 (Length: 394)
Name: NF9290_low_22
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_low_22 |
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| [»] scaffold0268 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 19457230 - 19457583
Alignment:
| Q |
19 |
attctcttctcctcgaaacgtatataagtgattctgctgaaaagaatcgcttatttcacgcaattgaaactattccatgtattgcnnnnnnngctgattg |
118 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||| |
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| T |
19457230 |
attctcttctcctcgaaacgtatataagcgattccgctgaaaagaatcgcttatttcatgcaattgaaacaattccatgtatcgcgaagaaagctgattg |
19457329 |
T |
|
| Q |
119 |
ggcgatgaaatggatcgattcaagcgattcttttgcagaaagaatcgttgcatttgcttgtgttgaaggaatctttttctccggaagcttctgtgcgatt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19457330 |
ggcgatgaaatggatcgattcaagcgattcttttgcagaaagaatcgttgcgtttgcttgtgttgaaggaatctttttctccggaagcttctgtgcgatt |
19457429 |
T |
|
| Q |
219 |
ttttggttgaaaaagcgtggtttaatgccgggattaaccttctcaaacgagcttatttcacgcgatgaaggattacactgtgatttcgcttgtttgttat |
318 |
Q |
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|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
19457430 |
ttctggttgaaaaagcgcggtttaatgccgggattaaccttctcaaacgagcttatttcacgcgacgaaggattgcactgtgatttcgcttgtttgttat |
19457529 |
T |
|
| Q |
319 |
actcacttctacgaaagaagctaagttcagagcgcgtgaaagaaattgtctgtg |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19457530 |
actcacttctacgaaagaagctaagttcagagcgcgtgaaagaaattgtttgtg |
19457583 |
T |
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Back To:
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Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 25025861 - 25025558
Alignment:
| Q |
19 |
attctcttctcctcgaaacgtatataagtgattctgctgaaaagaatcgcttatttcacgcaattgaaactattccatgtattgcnnnnnnngctgattg |
118 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||| |||||||| |||||||| |
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| T |
25025861 |
attctcttctcctcgaaacgtatataagcgattctgctgaaaagaatcgattatttcacgcaattgacacaattccgtgtattgctaagaaagctgattg |
25025762 |
T |
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| Q |
119 |
ggcgatgaaatggatcgattcaagcgattcttttgcagaaagaatcgttgcatttgcttgtgttgaaggaatctttttctccggaagcttctgtgcgatt |
218 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
25025761 |
ggctttgaaatggatcgattcaagcgattcttttgcagaaagaatcgttgctttcgcttgtgttgaaggaattttcttctccggaagcttctgtgcgatt |
25025662 |
T |
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| Q |
219 |
ttttggttgaaaaagcgtggtttaatgccgggattaaccttctcaaacgagcttatttcacgcgatgaaggattacactgtgatttcgcttgtttgttat |
318 |
Q |
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|| ||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||| |
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| T |
25025661 |
ttctggttgaaaaaacgcggtttaatgccgggattaactttctcaaacgagcttatttcacgcgacgaaggcttacactgtgattttgcttgtttgttat |
25025562 |
T |
|
| Q |
319 |
actc |
322 |
Q |
| |
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|||| |
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| T |
25025561 |
actc |
25025558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0268 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 24 - 367
Target Start/End: Original strand, 22724 - 23067
Alignment:
| Q |
24 |
cttctcctcgaaacgtatataagtgattctgctgaaaagaatcgcttatttcacgcaattgaaactattccatgtattgcnnnnnnngctgattgggcga |
123 |
Q |
| |
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|||||| | ||||| |||||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||| || ||||||||||| | |
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| T |
22724 |
cttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattgggcaa |
22823 |
T |
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| Q |
124 |
tgaaatggatcgattcaagcgattcttttgcagaaagaatcgttgcatttgcttgtgttgaaggaatctttttctccggaagcttctgtgcgattttttg |
223 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||| || |||||||| || |
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| T |
22824 |
tgaaatggattgattcaagcgattcttttgctgaaagaatcgttgcatttgcttgtgtagaaggaattttcttctccggaagcttttgcgcgattttctg |
22923 |
T |
|
| Q |
224 |
gttgaaaaagcgtggtttaatgccgggattaaccttctcaaacgagcttatttcacgcgatgaaggattacactgtgatttcgcttgtttgttatactca |
323 |
Q |
| |
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|||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||| || ||||| | ||||||||||| |||||||||||||||||| |
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| T |
22924 |
gttgaaaaagcgcggtttaatgccagggttaacattctcaaacgagcttatttcacgtgacgaaggtctgcactgtgattttgcttgtttgttatactca |
23023 |
T |
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| Q |
324 |
cttctacgaaagaagctaagttcagagcgcgtgaaagaaattgt |
367 |
Q |
| |
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||||||| |||||| |||| ||||||||| ||||| |||||||| |
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| T |
23024 |
cttctacaaaagaaactaacttcagagcgtgtgaaggaaattgt |
23067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 24 - 367
Target Start/End: Complemental strand, 10197364 - 10197021
Alignment:
| Q |
24 |
cttctcctcgaaacgtatataagtgattctgctgaaaagaatcgcttatttcacgcaattgaaactattccatgtattgcnnnnnnngctgattgggcga |
123 |
Q |
| |
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|||||| | ||||| |||||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||| || ||||||||||| | |
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| T |
10197364 |
cttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattgggcaa |
10197265 |
T |
|
| Q |
124 |
tgaaatggatcgattcaagcgattcttttgcagaaagaatcgttgcatttgcttgtgttgaaggaatctttttctccggaagcttctgtgcgattttttg |
223 |
Q |
| |
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|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||| || |||||||| || |
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| T |
10197264 |
tgaaatggattgattcaagcgattcttttgctgaaagaatcgttgcatttgcttgtgtagaaggaattttcttctccggaagcttttgcgcgattttctg |
10197165 |
T |
|
| Q |
224 |
gttgaaaaagcgtggtttaatgccgggattaaccttctcaaacgagcttatttcacgcgatgaaggattacactgtgatttcgcttgtttgttatactca |
323 |
Q |
| |
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|||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||| || ||||| | ||||||||||| |||||||||||||||||| |
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|
| T |
10197164 |
gttgaaaaagcgcggtttaatgccagggttaacattctcaaacgagcttatttcacgtgacgaaggtctgcactgtgattttgcttgtttgttatactca |
10197065 |
T |
|
| Q |
324 |
cttctacgaaagaagctaagttcagagcgcgtgaaagaaattgt |
367 |
Q |
| |
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||||||| |||||| |||| ||||||||| ||||| |||||||| |
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| T |
10197064 |
cttctactaaagaaactaacttcagagcgtgtgaaggaaattgt |
10197021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 5971481 - 5971517
Alignment:
| Q |
19 |
attctcttctcctcgaaacgtatataagtgattctgc |
55 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||| |
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| T |
5971481 |
attctcttctcctcgaaatgtatataagtgattctgc |
5971517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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