View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_low_26 (Length: 389)
Name: NF9290_low_26
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 120 - 370
Target Start/End: Original strand, 47706711 - 47706955
Alignment:
| Q |
120 |
cgttcatcacattacaataagaaacattataatgtaaatcgtttttatatacactttaaattaaatcacacatcaatgatattttgctatttcatcaaaa |
219 |
Q |
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| T |
47706711 |
cgttcatcacattacaataagaaacattataat------cgtttttatatacactttaaattaaatcacacatcaatgatattttgctatttcatcaaaa |
47706804 |
T |
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| Q |
220 |
atatatccacagcacaaatatctatatacgttgaagaaaataatgattgtagtactagctagtaaaacgtacaaagtacaattttgtttgagataaaaag |
319 |
Q |
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| T |
47706805 |
atatatccacaacacaaatatctatatatgttgaagaaaataatgattgtagtactagctagtaaaacgtacaaagtacaattttgtttgagataaaaag |
47706904 |
T |
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| Q |
320 |
taatttcaaactcttataatgaggaaaaaatttcaaactcttataattggt |
370 |
Q |
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| T |
47706905 |
taatttcaaactcttataatgaggaaaaaatttcaaactcttataattggt |
47706955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 47706592 - 47706655
Alignment:
| Q |
1 |
acaaagcatatgttaatttgaaaatttgcataaaaacatctgactctttctttattaagtggtc |
64 |
Q |
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| T |
47706592 |
acaaagcataagttaatttaaaaatttgcataaaaacatctgactctttctttattaagtggtc |
47706655 |
T |
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