View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_low_32 (Length: 375)
Name: NF9290_low_32
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 201 - 355
Target Start/End: Complemental strand, 36628093 - 36627939
Alignment:
| Q |
201 |
aatattaaagtatttcatgaattaattaccatggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactccatctcacctcaaacttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36628093 |
aatattaaagtatttcatgaattaattaccatggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactccatctcacctcaaacttt |
36627994 |
T |
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| Q |
301 |
acccactttcattcatagacaacattattttcagaaactatgcgccattgcttta |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36627993 |
acccactttcattcatagacaacattattttcagaaactatgcgccattgcttta |
36627939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 36628327 - 36628124
Alignment:
| Q |
1 |
aaaacaaattcaaaaattgatttggtcataccgataacaaagcaaatgtatctctttcctaaaataatacactttggtcaactgtgtgannnnnnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36628327 |
aaaacaaattcaaaaattgatttggtgataccgataacaaagcaaatgtatctttttcctaaaataatacactttggtcaactgtgtgattttttttttt |
36628228 |
T |
|
| Q |
101 |
naccaaaacatacgttagttcatgcttcatactagtcttaatcttataatttatgcactatataaccacttgtggtaatgttaaggcagtacattcaatc |
200 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36628227 |
-accaaaagatacgtttgttcatgcttcatactagtcttaatcttataatttatgcactatataaccacttgtggtattgttaaggcagtacattcaatc |
36628129 |
T |
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| Q |
201 |
aatat |
205 |
Q |
| |
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||||| |
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| T |
36628128 |
aatat |
36628124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 141 - 358
Target Start/End: Complemental strand, 36622917 - 36622699
Alignment:
| Q |
141 |
atcttataatttatgcactatataaccacttgtggtaatgttaaggcagtacattcaatcaatattaaagt-atttcatgaattaattaccatggaaata |
239 |
Q |
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||||||||||| || || |||||||||||||||| || |||| | || |||||||||||||||| |||| || ||| ||| ||||||||||||||| |
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| T |
36622917 |
atcttataattcattcattatataaccacttgtgatatagttatgtcaatacattcaatcaatatacaagtcatagcatagattgattaccatggaaata |
36622818 |
T |
|
| Q |
240 |
gaattactttcaagagaaaccatcaaaccttcatcaccaactccatctcacctcaaactttacccactttcattcatagacaacattattttcagaaact |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||||||| ||| ||| |||| |
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| T |
36622817 |
gaattactttcaagagaaaccatcaaaccttcatcaccaactccttctcaccttaaactttatccactttctttcatagacaacattgtttgcagtaact |
36622718 |
T |
|
| Q |
340 |
atgcgccattgctttactt |
358 |
Q |
| |
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|| |||||| |||||||| |
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|
| T |
36622717 |
atctgccattactttactt |
36622699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 220 - 358
Target Start/End: Complemental strand, 36634207 - 36634072
Alignment:
| Q |
220 |
aattaattaccatggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactccatctcacctcaaactttacccactttcattcataga |
319 |
Q |
| |
|
|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||| || ||||| |
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| T |
36634207 |
aattgattaccatggagattgaattactttcaagagaaaccatcaaaccttcatcaccaactc---ctcatctcaaactttttccactttctttaataga |
36634111 |
T |
|
| Q |
320 |
caacattattttcagaaactatgcgccattgctttactt |
358 |
Q |
| |
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||||||| |||||| ||||||| ||||||||||||||| |
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| T |
36634110 |
caacatttatttcagtaactatgtgccattgctttactt |
36634072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 225 - 326
Target Start/End: Original strand, 34328889 - 34328990
Alignment:
| Q |
225 |
attaccatggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactccatctcacctcaaactttacccactttcattcatagacaaca |
324 |
Q |
| |
|
|||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||| ||||||||||||| |
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| T |
34328889 |
attaccatggaaattgaattaatttctagagaaaccatcaaaccttcatcaccaactccttctcacctcaaaatatacccactttctttcatagacaaca |
34328988 |
T |
|
| Q |
325 |
tt |
326 |
Q |
| |
|
|| |
|
|
| T |
34328989 |
tt |
34328990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 231 - 331
Target Start/End: Original strand, 34319987 - 34320087
Alignment:
| Q |
231 |
atggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactccatctcacctcaaactttacccactttcattcatagacaacattattt |
330 |
Q |
| |
|
|||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||| | |||| |||||||| ||||| || |||||| ||| |
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| T |
34319987 |
atggaaattgaattaatttctagagaaaccatcaaaccttcatcaccaactcctactcacctcagaatttatccactttctttcattgataacatttttt |
34320086 |
T |
|
| Q |
331 |
t |
331 |
Q |
| |
|
| |
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|
| T |
34320087 |
t |
34320087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 45307192 - 45307140
Alignment:
| Q |
231 |
atggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactcc |
283 |
Q |
| |
|
|||||||| |||||| |||| ||||||||||||||||||||||| |||||||| |
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|
| T |
45307192 |
atggaaatggaattagtttccagagaaaccatcaaaccttcatcgccaactcc |
45307140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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