View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_low_36 (Length: 358)
Name: NF9290_low_36
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_low_36 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 12 - 358
Target Start/End: Original strand, 25084530 - 25084877
Alignment:
| Q |
12 |
aagcataggcatacaaataatgtaactaaataaa-tatacagcctccataaaaaacgcaaaaactagcacaaaggtaggaagcgctgatccgcacagacg |
110 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25084530 |
aagcataggcatacaaataatgtaactaaataaaatatacagcctccataaaaaacgcaaaaactagcacaaaggtaggaagcgctgatccgcacagacg |
25084629 |
T |
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| Q |
111 |
cattaaaatgaaaacggaccgttcaaatatacttatcgacggtcattattatttttctcaatacgcacggatcgctaatttagaccgtcgataagttgaa |
210 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25084630 |
cattaaaatgaaaacggaccgttcaaatatactcatcgacggtcattattatttttctcaatacgcacggatcgctaatttagaccgtcaataagttgaa |
25084729 |
T |
|
| Q |
211 |
atccaacgacgcagagaaaaacacaaatttgagtttccctcttattcatcccgctagctaccaactaccattcataaatactcagatccgtttctctctt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25084730 |
atccaacgacgcagagaaaaacacaaatttgagtttccctcttattcatcccgctagctaccaactaccattcataaatactcagatccgtttctctctt |
25084829 |
T |
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| Q |
311 |
tcccactcacaattcaattcaaattcaaaaccctaatttctctaattt |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25084830 |
tcccactcacaattcaattcaaattcaaaaccctaatttctctaattt |
25084877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 63 - 299
Target Start/End: Complemental strand, 24924096 - 24923858
Alignment:
| Q |
63 |
aaacgcaaaaactagcacaaaggtaggaagcgctgatccgcacagacgcatt-aaaatgaaaacggaccgttcaaatatacttatcgacggtcattatta |
161 |
Q |
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|||| ||||||||| | |||||| || ||| |||||||||||||| || || ||||||| | | |||||||||||| ||||||||||| ||| |||| |
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| T |
24924096 |
aaacacaaaaactaacgcaaaggaagaaagtgctgatccgcacaggcgaatccaaaatgatatctcaccgttcaaataaacttatcgacgttcactattc |
24923997 |
T |
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| Q |
162 |
tttttctcaatacgcacggatcgctaatttagaccgtcgataagttgaaatccaacgacgcagagaaaaacacaaatttgagtttccctcttattcatcc |
261 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||| || ||||||||||||||||| |||||||||| ||||| ||||||||| ||| ||| |
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| T |
24923996 |
tttttctcaatacgcacggatcgctaatataaaccgtcgataacttaaaatccaacgacgcagaagaaaacacaaaattgag-ttccctcttcttcctcc |
24923898 |
T |
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| Q |
262 |
cg--ctagctaccaactaccattcataaatactcagatcc |
299 |
Q |
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|| || ||||||| ||||||| |||||||||||||||| |
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| T |
24923897 |
cgctctcactaccaattaccattgataaatactcagatcc |
24923858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 95 - 299
Target Start/End: Complemental strand, 24920471 - 24920257
Alignment:
| Q |
95 |
ctgatccgcacagacgcattaaaatgaaaacggaccgttcaaatatacttatcgacggtcattattatttttctcaa-tacgcacggatcgctaatttag |
193 |
Q |
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||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||| ||| |||| |||| | || ||| | |||||||||||| ||| |
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| T |
24920471 |
ctgatccgcacaggctaattcaaatgaaaacggaccgttcaaatatacttatcaacgttcagtattgttttggtgaactacacgcggatcgctaatatag |
24920372 |
T |
|
| Q |
194 |
accgtcgataagttgaaatccaacgacgcagagaaaaacacaaatttgagtttccctcttat---------tcatcccgctagctaccaactaccattca |
284 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||| || |||||||||||| | |||||||||| ||| |||| |||||| || |
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| T |
24920371 |
accgtcgataagttgaaatccaacgacacagaagaaaacacaaaattcagtttccctcttcttcttcatcctcatcccgctcgcttccaattaccataca |
24920272 |
T |
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| Q |
285 |
taaatactcagatcc |
299 |
Q |
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||||||||||||||| |
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| T |
24920271 |
taaatactcagatcc |
24920257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 178 - 327
Target Start/End: Original strand, 24981719 - 24981869
Alignment:
| Q |
178 |
cggatcgctaatttagaccgtcgataagttgaaatccaacgacgcagagaaaaacacaaatttgagtttccctcttattcatcccgctagctaccaacta |
277 |
Q |
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|||||||||||| |||| |||||||||| |||||||||||||| |||| |||||||||| || ||||||||||||||||| |||||| |||| ||| |
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| T |
24981719 |
cggatcgctaatatagatcgtcgataagatgaaatccaacgactcagatcaaaacacaaaattcagtttccctcttattcaacccgctcgctagtcgcta |
24981818 |
T |
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| Q |
278 |
ccattcataaatactcagatccgtttctc-tctttcccactcacaattcaa |
327 |
Q |
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||||||||||||||||||||||| ||||| | ||||||||||||||||||| |
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| T |
24981819 |
ccattcataaatactcagatccgcttctcttttttcccactcacaattcaa |
24981869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 318
Target Start/End: Complemental strand, 31826127 - 31825933
Alignment:
| Q |
125 |
cggaccgttcaaatatacttatcgacggtcattattatttttct-caatacgcacggatcgctaatttagaccgtcgataagttgaaatccaacgacgca |
223 |
Q |
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|||| |||||||||| ||||||| ||| |||| ||| |||| ||||||||||||||||| | ||| |||||| || | | |||||||||||| | |
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| T |
31826127 |
cggagcgttcaaatacacttatcaacgttcatcattcgctttccgcaatacgcacggatcgcaatcttacaccgtctattacatcaaatccaacgactga |
31826028 |
T |
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| Q |
224 |
gagaaaaacacaaatttgagtttccctcttattcatcccgctagctaccaactacc-attcataaatactcagatccgtttctctctttcccactc |
318 |
Q |
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|| |||||||||| || |||| ||||||||||||||||||| | | | ||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
31826027 |
gatcaaaacacaaaattcagtt-ccctcttattcatcccgctctcacgctcccacccattcataaatactcagatccccttctctctttcccactc |
31825933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 21585090 - 21585022
Alignment:
| Q |
169 |
caatacgcacggatcgctaatttagaccgtcgataagttgaaatccaacgacgcagagaaaaacacaaa |
237 |
Q |
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||||||||||||||||| |||||| ||||||||| | | |||||||||||| || | |||||||||| |
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| T |
21585090 |
caatacgcacggatcgccaatttaaaccgtcgattacgtaaaatccaacgacccatatcaaaacacaaa |
21585022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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