View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_low_39 (Length: 347)
Name: NF9290_low_39
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_low_39 |
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| [»] scaffold0491 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 51 - 169
Target Start/End: Original strand, 2320181 - 2320299
Alignment:
| Q |
51 |
aattagagtagctaaaaatctcttataataacattcaaggatccattacacatgagttgggtttcctgaaaaatctcacaaaattggatccatctcacaa |
150 |
Q |
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| T |
2320181 |
aattagactacctagacatctcttgtaataacattcaaggatccattccacatgagttgggtttcctgaaaaatataacgacattacatctatctgacaa |
2320280 |
T |
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| Q |
151 |
cagactctatggaaacttt |
169 |
Q |
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| T |
2320281 |
cagactcaatggaaacttt |
2320299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 2327178 - 2327238
Alignment:
| Q |
202 |
aacttgcaccctaaaagggacacttatgcacaagactttctaattgactaagtcaatagac |
262 |
Q |
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| T |
2327178 |
aacttggaccctaaaagggacacttatgcacaagactttgtaattgactaaatctatagac |
2327238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 63 - 169
Target Start/End: Original strand, 1105141 - 1105247
Alignment:
| Q |
63 |
taaaaatctcttataataacattcaaggatccattacacatgagttgggtttcctgaaaaatctcacaaaattggatccatctcacaacagactctatgg |
162 |
Q |
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| T |
1105141 |
taaacatctctcacaacaacattcaaggttccattcctcttgagttggggttcttgaagaatctcactatattagatctatctcacaatagactcaatgg |
1105240 |
T |
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| Q |
163 |
aaacttt |
169 |
Q |
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| T |
1105241 |
aaacttt |
1105247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 2328547 - 2328607
Alignment:
| Q |
51 |
aattagagtagctaaaaatctcttataataacattcaaggatccattacacatgagttggg |
111 |
Q |
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| T |
2328547 |
aattagagtacctagacatctcttataataacattcaaggatccattcctcacgagttggg |
2328607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 2336470 - 2336548
Alignment:
| Q |
51 |
aattagagtagctaaaaatctcttataataacattcaaggatccattacacatgagttgggtttcctgaaaaatctcac |
129 |
Q |
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| T |
2336470 |
aattagagtacctagacatgtcttataataacattcaaggatccattccttatggtttggggttcctaaaaaatctcac |
2336548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 168
Target Start/End: Complemental strand, 2138 - 2032
Alignment:
| Q |
62 |
ctaaaaatctcttataataacattcaaggatccattacacatgagttgggtttcctgaaaaatctcacaaaattggatccatctcacaacagactctatg |
161 |
Q |
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| T |
2138 |
ctaaacatctctcacaacaacattcaaggttccattcctcttgagttggggttcctcagaaatatcatcacattagatctatctcacaatagactcaatg |
2039 |
T |
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| Q |
162 |
gaaactt |
168 |
Q |
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| T |
2038 |
gaaactt |
2032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 168
Target Start/End: Complemental strand, 18740260 - 18740154
Alignment:
| Q |
62 |
ctaaaaatctcttataataacattcaaggatccattacacatgagttgggtttcctgaaaaatctcacaaaattggatccatctcacaacagactctatg |
161 |
Q |
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| T |
18740260 |
ctaaacatctctcacaacaacattcaaggttccattcctcttgagttggggttcctcagaaatatcatcacattagatctatctcacaatagactcaatg |
18740161 |
T |
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| Q |
162 |
gaaactt |
168 |
Q |
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||||||| |
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| T |
18740160 |
gaaactt |
18740154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 168
Target Start/End: Complemental strand, 18745224 - 18745118
Alignment:
| Q |
62 |
ctaaaaatctcttataataacattcaaggatccattacacatgagttgggtttcctgaaaaatctcacaaaattggatccatctcacaacagactctatg |
161 |
Q |
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||||| |||||| | || ||||||||||| |||||| | | ||||||||| ||||| | |||| ||| | ||| |||| ||||||||| |||||| ||| |
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| T |
18745224 |
ctaaacatctctcacaacaacattcaaggttccattcctcttgagttggggttcctcagaaatatcatcacattagatctatctcacaatagactcaatg |
18745125 |
T |
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| Q |
162 |
gaaactt |
168 |
Q |
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||||||| |
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| T |
18745124 |
gaaactt |
18745118 |
T |
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