View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_low_40 (Length: 345)
Name: NF9290_low_40
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 11 - 305
Target Start/End: Complemental strand, 1179272 - 1178967
Alignment:
| Q |
11 |
cagagaatgttgtgcaggttattttccccatgaattttaataaaattccaaaatgatttctgaatatgaaaattgttgatcacactagtctttctgagat |
110 |
Q |
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| T |
1179272 |
cagagaatgttgtgcaggttattttccccatgaattttaataaaattccaaaatgatttctgaataagaaaattcttgatcacactagtctttctgagat |
1179173 |
T |
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| Q |
111 |
catttcgcag-----------tcatctaatgatcgagaattttcaacttcattgattttgaagatcagattccttaacccctaacaatttcatgcattaa |
199 |
Q |
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| T |
1179172 |
catttcgcaggctaaattaactcatctaatgatcgagaattttcaatttcattgattttgtagatcagattccttaacccctaacaatttcatgcattaa |
1179073 |
T |
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| Q |
200 |
aacatgattcattcatgagtagaatctaccacataggtgataataattctagatcttgaactaacgatggatgtaactgaaaagtaacttaaaatgtagc |
299 |
Q |
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| T |
1179072 |
aacatgattcattcatgagtagaatctaccacataggtgataataattctagatcttgaactaacgatggatgtaactgaaaagtaacttaaaatgtaac |
1178973 |
T |
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| Q |
300 |
tcaaaa |
305 |
Q |
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|||||| |
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| T |
1178972 |
tcaaaa |
1178967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 305
Target Start/End: Original strand, 43169688 - 43169735
Alignment:
| Q |
258 |
aactaacgatggatgtaactgaaaagtaacttaaaatgtagctcaaaa |
305 |
Q |
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| T |
43169688 |
aactaacgatagatgtaactgaaaagcaacttaaaatgtaactcaaaa |
43169735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 327
Target Start/End: Complemental strand, 1178897 - 1178862
Alignment:
| Q |
292 |
aatgtagctcaaaatttagacagcggcatagaatgc |
327 |
Q |
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| T |
1178897 |
aatgtaactcaaaatttagacagcggcatagaatgc |
1178862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 35029201 - 35029247
Alignment:
| Q |
57 |
tccaaaatgatttctgaatatgaaaattgttgatcacactagtcttt |
103 |
Q |
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| T |
35029201 |
tccaaaatgacttttgaatatgaaaattctcgatcacactagtcttt |
35029247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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