View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_low_43 (Length: 335)
Name: NF9290_low_43
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_low_43 |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-172; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 2098173 - 2098485
Alignment:
| Q |
1 |
tgacacgatttctttgttaaaacaaccatggaactatccccttcctagacaaaagaaaggcttctctgaattcatttagtttcatattcttcctaattgg |
100 |
Q |
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| T |
2098173 |
tgacacgatttctttgttaaaacaaccatggaactatccccttcctagaaaaaagaaaggcttctctgaattcatttagtttcatattcttcctaattgg |
2098272 |
T |
|
| Q |
101 |
ttagatattgttaagatttactcaccaccactcttcattgtttatacatttttcttttctaaacaatttaccaacatatgttattgttttgcaacagctg |
200 |
Q |
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| T |
2098273 |
ttagatattgttaagatttactcaccactactcttcattgtttatacatttttcttttctaaacaatttaccaacatatgttattgttttgcaacagctg |
2098372 |
T |
|
| Q |
201 |
aaaggtttatggaacatcaacaatgctcatttaaggaacttatgcaatgaggccttggagctaagggataactttcacttgttcagcatcttttacattc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2098373 |
aaaggtttatggaacatcaacaatgctcatttaaggaacttatgcaatgaggccttggagctaagggataactttcacttgttcagcatcttttacattc |
2098472 |
T |
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| Q |
301 |
ctagggtatttat |
313 |
Q |
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||||||||||||| |
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| T |
2098473 |
ctagggtatttat |
2098485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 2106627 - 2106939
Alignment:
| Q |
1 |
tgacacgatttctttgtt-aaaacaaccatggaactatccccttcct----agacaaaagaaaggcttctctgaattcatttagtttcatattc-ttcct |
94 |
Q |
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| T |
2106627 |
tgacatgatttctttgttaaaaacaactatggaactatccctttcttaaaaaaaaaaaaaaaaggctcctttgaattcatttagttttatatcctttcct |
2106726 |
T |
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| Q |
95 |
aattggttagatattgttaagatttactcaccaccactcttcattgtttatacatttttcttttctaaacaatttaccaacatatgttattgttttgcaa |
194 |
Q |
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| T |
2106727 |
aattggttagatattgttaagatttactcattgctactcttcattttttatacatttttcttttctaaacaatttaccaac--atgttattgttttgcaa |
2106824 |
T |
|
| Q |
195 |
cagctgaaaggtttatggaacatcaacaatgctcatttaaggaacttatgcaatgaggccttggagctaagggataactttcacttgttcagcatctttt |
294 |
Q |
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||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2106825 |
cagttgaaaggtttatggaacatcaacaatgcttatttaaggaacttatgcaatgaggctttggagctaagggataactttcacttgttcagcatctttt |
2106924 |
T |
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| Q |
295 |
acattcctagggtat |
309 |
Q |
| |
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| T |
2106925 |
acattcctagggtat |
2106939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 279
Target Start/End: Original strand, 2088541 - 2088674
Alignment:
| Q |
147 |
catttttcttttctaaacaatttaccaacatatgttattg-ttttgcaacagctgaaaggtttatggaacatcaacaatgctcatttaaggaacttatgc |
245 |
Q |
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||||||||||||||||||||| ||| || ||||||||||| ||||||||||| | || |||| ||| |||||| ||||||| ||||||||| |||||| |
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| T |
2088541 |
catttttcttttctaaacaatatactaagatatgttattggttttgcaacagtttaagggttcatgtaacatctacaatgcaaatttaaggagcttatgt |
2088640 |
T |
|
| Q |
246 |
aatgaggccttggagctaagggataactttcact |
279 |
Q |
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| T |
2088641 |
aacgaggctttggagctgaagggtgactttcact |
2088674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 2047859 - 2047899
Alignment:
| Q |
84 |
atattcttcctaattggttagatattgttaagatttactca |
124 |
Q |
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| T |
2047859 |
atattcttcctaattggttagatattgttaatatttactca |
2047899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 2065558 - 2065606
Alignment:
| Q |
150 |
ttttcttttctaaacaatttaccaacatatgtta-ttgttttgcaacag |
197 |
Q |
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|||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
2065558 |
ttttctttgctaaacaatttaccaacatatgttatttgttttgcaacag |
2065606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 2082854 - 2082911
Alignment:
| Q |
51 |
aaaagaaaggcttctctgaattcatttagtttcatattcttcctaattggttagatatt |
109 |
Q |
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| T |
2082854 |
aaaagaaaggtttctttggattcatttagtt-catattcatcctaattggttagatatt |
2082911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 2048154 - 2048225
Alignment:
| Q |
208 |
tatggaacatcaacaatgctcatttaaggaacttatgcaatgaggccttggagctaagggataactttcact |
279 |
Q |
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||||||| |||||||| | | |||||||||||||||| ||||||| ||||||||| ||||||||||||| |
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| T |
2048154 |
tatggaaaatcaacaacccgcgtttaaggaacttatgcgatgaggctttggagctagcagataactttcact |
2048225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 2135553 - 2135497
Alignment:
| Q |
141 |
tttatacatttttcttttctaaacaatttaccaacatatgttattgttttgcaacag |
197 |
Q |
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||||| |||||||||||| ||||||||||| |||||||||||| |||||||||| |
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| T |
2135553 |
tttatgcatttttcttttttaaacaatttaggcgcatatgttattgctttgcaacag |
2135497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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