View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_low_44 (Length: 333)
Name: NF9290_low_44
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_low_44 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 333
Target Start/End: Complemental strand, 673167 - 672841
Alignment:
| Q |
7 |
gattgattatccaagggtcactgtttatgggattttgggttgcatgagaagcaacccaatagagaccatcccaacaatcattataacctgcaggaagata |
106 |
Q |
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| T |
673167 |
gattgattatccaagggtcactgtttatgggattttgagttgcatgagaagcaacccaatagagaccatcccaacaatcattataacctgcaggaagata |
673068 |
T |
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| Q |
107 |
atgctctggagcatttctatgttctatggaagcaatcaaaatatttgcttgagaagctaagaggttacaatatgtatggtggatggatgaatatgctgat |
206 |
Q |
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| T |
673067 |
atgctctggagcatttctatgttctatggaagcaatcaaaatatttgcttgagaagctaagaggttacaatatgcatggtggatggatgaatatgctgat |
672968 |
T |
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| Q |
207 |
tcaaagctgaatgcaccaccataaaaataaaccaagatggagagtttttggttttgatcattggtttgtgttagttttggaaggtaaagtctagcagtga |
306 |
Q |
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| T |
672967 |
tcaaagctgaatgcaccaccataaaaataaaccaagatggagagtttttggttttgatcattggtttgtgttagttttggaaggtaaagtctagcagtga |
672868 |
T |
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| Q |
307 |
ggtgagggtcattggaaaagacaatgt |
333 |
Q |
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| T |
672867 |
ggtaagggtcattggaaaagacaatgt |
672841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 663344 - 663303
Alignment:
| Q |
50 |
atgagaagcaacccaatagagaccatcccaacaatcattata |
91 |
Q |
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| T |
663344 |
atgagaagcaacccaattgagaccatcccaacaatcattata |
663303 |
T |
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