View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_low_49 (Length: 322)
Name: NF9290_low_49
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 39196400 - 39196693
Alignment:
| Q |
1 |
actttgtcccacccaacctttgctcttttcgttttcacaacaaaaccttccatgttcacttgcaggttcatcgatgttgtttgggagagaatatgaacct |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39196400 |
actttgtcccactcaacctttgctcttttcgttttcacaacaaaaccttccatgttcacttgcaggttcatcgattttgtttgggagagaatatgaacct |
39196499 |
T |
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| Q |
101 |
agcaagatttgaggaaaatgaaccttggaagcggtttatgtgcaaggaaaactatggaaaacaattacatccatgatgtggagaggaccattcattcatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39196500 |
agcaagatttgaggaaaatgaaccttggaagcggtttttgtgcaaggaaaactatggaaaacaattacatccatgacgtggagaggaccattcattcatt |
39196599 |
T |
|
| Q |
201 |
aggttagaagtagatgacttgatgttggaacacttgtctttcctctctccaatgctgcatatcaaaatctgttttgggatagttatctctgctt |
294 |
Q |
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| T |
39196600 |
aggttagaagtagatgacttgatgttggaacacttggctttcctctctccaatgctgcatatcaaaatctgttttgggatagttatctttgctt |
39196693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 21921722 - 21922000
Alignment:
| Q |
1 |
actttgtcccacccaacctttgctcttttcgttttcacaacaaaaccttccatgttcacttgcaggttcatcgatgttgtttgggagagaatatgaacct |
100 |
Q |
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| T |
21921722 |
actttgtcccactcaacctttgctcttttcgttttcacaacaaaaccttccatgttcacttgcaggttcatcgatgttgtttgggagagaatatgaacct |
21921821 |
T |
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| Q |
101 |
agcaagatttgaggaaaatgaaccttggaagcggtttatgtgcaaggaaaactatggaaaacaattacatccatgatgtggagaggaccattcattcatt |
200 |
Q |
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| T |
21921822 |
agcaagatttgaggaaaatgaaccttggaagcggtttatgtgcaaggaaaactatggaaaacaattacatccatgacatggagaggaccattcattcatt |
21921921 |
T |
|
| Q |
201 |
aggttagaagtagatgacttgatgttggaacacttgtctttcctctctccaatgctgcatatcaaaatctgttttgggatagttatctctgctt |
294 |
Q |
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| T |
21921922 |
aggtta---------------atgttggaacatttgtcttacctctctccactgctgcatatcaaaatctgttttgggatagttatctttgctt |
21922000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 75 - 288
Target Start/End: Complemental strand, 38644973 - 38644765
Alignment:
| Q |
75 |
tgttgtttgggagagaatatgaacctagcaagatttgaggaaaatgaaccttggaagcggtttatgtgcaaggaaaactatggaaaacaattacatccat |
174 |
Q |
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| T |
38644973 |
tgttgtttgggagagaatatgaacctagcaagatggg-ggaatatgaatcttggaagccaattttgtgcaaagaaaactatggaaaacaattacattcat |
38644875 |
T |
|
| Q |
175 |
gatgtggagaggaccattcattcattaggttagaagtagatgactt-gatgttggaacacttgtctttcctctctccaatgctgcatatcaaaatctgtt |
273 |
Q |
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| |||| | ||||||||||||||||||||| || ||||| ||| ||||||||||| ||||||||||||||||| ||||||||||||||| |||| |
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| T |
38644874 |
ggcatggacaagaccattcattcattaggttacaa--agatgtcttggatgttggaacttttgtctttcctctctcc---gctgcatatcaaaatatgtt |
38644780 |
T |
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| Q |
274 |
ttgggatagttatct |
288 |
Q |
| |
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|||||||| |||||| |
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| T |
38644779 |
ttgggataattatct |
38644765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 34047390 - 34047467
Alignment:
| Q |
21 |
tgctcttttcgttttcacaacaaaaccttccat----gttcacttgcaggttcatcgatgttgtttgggagagaatat |
94 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||| |
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| T |
34047390 |
tgctctttttgttttcacaacaaaaccttccatgttcgttcacttgcaggtttatggatgttgtttgggagagaatat |
34047467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 294
Target Start/End: Original strand, 34047468 - 34047650
Alignment:
| Q |
118 |
atgaaccttggaagcggtttatgtgcaaggaaaactatggaaaacaattacatccatgatgtggagaggacc--------attcattcattaggttagaa |
209 |
Q |
| |
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||||| |||| ||||| ||| |||||||||||| |||| |||||||||||||| ||||| |||| | |||| |||||||||||||||| || |
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| T |
34047468 |
atgaatcttgaaagcgatttttgtgcaaggaaagctatagaaaacaattacattcatgacatggacaagaccgttcattcattcattcattaggtttcaa |
34047567 |
T |
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| Q |
210 |
gtagatgacttg-atgttggaacacttgtctttcctctctccaatgctgcatatcaaaatctgttttgggatagttatctctgctt |
294 |
Q |
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|||||| |||| |||||||||| |||||| |||| |||||| ||||||||| |||| ||||||||||||||| ||| ||||| |
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| T |
34047568 |
atagatgtcttggatgttggaacttttgtctctcctttctcca---ctgcatatctaaatatgttttgggatagttgtctttgctt |
34047650 |
T |
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