View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_low_5 (Length: 562)
Name: NF9290_low_5
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Original strand, 43357012 - 43357548
Alignment:
| Q |
1 |
ttgcttttccatcatgcagcacctcatccaaactcgagtcatcatcagatgcatcaccatctacctcgcttgacgagtcggagtctgagtagttctcaaa |
100 |
Q |
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| T |
43357012 |
ttgcttttccatcatgcagcacctcatccaaactcgagtcatcatcagatgcatcaccatctacctcgcttgacgagtcggagtctgagtagttctcaaa |
43357111 |
T |
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| Q |
101 |
agaatgttcctcatgagtagggacatcagaatatccttcacctggtacaaagaatgcagaattacatctgttagtgttgccttttgtattctctagcaca |
200 |
Q |
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| T |
43357112 |
agaatgttcctcatgagtagggacatcagaatatccttcacctggtacaaagaatacagaattacatctgttagtgttgccttttgtattctctagcaca |
43357211 |
T |
|
| Q |
201 |
ttgaaattcatggggtagatgttgcattgttcttgtttagcaaaggtttgcagttgctgcagttcctttgagttttctctgacatccattgttgatgttg |
300 |
Q |
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| T |
43357212 |
ttgaaattcatggggtagatgttgtattgttcttgtttagcaaaggtttgcagttgctgcagttcctttgagttttctctgacatccattgttgatgttg |
43357311 |
T |
|
| Q |
301 |
aatgaggaggaacattacacaaaggtgtttatatatacgaggattgagtgcagtactggtcctgaaatgtcataatgaggaccgttataaaacgaagaaa |
400 |
Q |
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| T |
43357312 |
aatgaggaggaacattacacaaaggtgtttatatatacgaggattgagtgcagtactggtcctgaaatgtcataatgaggaccgttataaaacgaagaaa |
43357411 |
T |
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| Q |
401 |
acgtagaaagcaaaagttatgaggtaattatgataataattcaattggaccctggttttggaaatttgagtaaggtcgcatccttcttttgaagtgtttg |
500 |
Q |
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| T |
43357412 |
acgtagaaagcaaaagttatgaggtaattatgataataattcaattggaccctggttttggaaatttgagtaaggtcgcatccttcttttgaag----tg |
43357507 |
T |
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| Q |
501 |
ttattatggccccatgacactgctgttttactatatttgac |
541 |
Q |
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| T |
43357508 |
ttattatggccccatgacactgctgttttactatatttgac |
43357548 |
T |
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