View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_low_59 (Length: 300)
Name: NF9290_low_59
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 44788016 - 44788284
Alignment:
| Q |
18 |
cacagaccatttatgatataagccatcctttcctttgtataaactatgttacaatgggtccaaatacacaaccctactatcgtaagcttactcaaaatca |
117 |
Q |
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| T |
44788016 |
cacagaccatttatgatataagccatcctttcctttgtataaactatgttacaatgggtcaaaatacacaaccctactatcgtaagcttactcaaaatca |
44788115 |
T |
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| Q |
118 |
gttattcgtggctttgttctcatctatatggaactgagaaaaccaaacaatgatgaaagtacaactctaatatttctcgcaagaatgatatgaatgaaaa |
217 |
Q |
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| T |
44788116 |
gttattcgtggctttgttctcatctatatggaactgagaaaaccaaacaatgataaaagtacaactctaatatttctcgcaagaatgatatgaatgaaaa |
44788215 |
T |
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| Q |
218 |
acagaaacaaaacctaatagagggagttttctacctcaaaagtttcgtatatgctcttctgtcatttgt |
286 |
Q |
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| T |
44788216 |
acagaaacaaaacctaatagagggagttttctacctcaaaagtttcgtatatgctcttctgtcatttgt |
44788284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 36681625 - 36681503
Alignment:
| Q |
19 |
acagaccatttatgatataagccatcctttcctttgtataa------actatgttacaatgggtccaaatacacaaccctactatcgtaagcttactcaa |
112 |
Q |
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| T |
36681625 |
acagaccattcatggtataagccatcctctcctttgtataactttaaactatgttacaatgggtccaaatacacaaccctactattgtaaggttactcaa |
36681526 |
T |
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| Q |
113 |
aatcagttattcgtggctttgtt |
135 |
Q |
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| T |
36681525 |
aatcagttattcgtggctttgtt |
36681503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 36681470 - 36681418
Alignment:
| Q |
233 |
aatagagggagttttctacctcaaaagtttcgtatatgctcttctgtcatttgt |
286 |
Q |
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| T |
36681470 |
aatagagggagttttctacctcaaaa-tttcgtatatcctcttctgtcctttgt |
36681418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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