View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_low_72 (Length: 251)
Name: NF9290_low_72
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_low_72 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 21 - 245
Target Start/End: Complemental strand, 42789698 - 42789476
Alignment:
| Q |
21 |
ttatcattagaagctatagcatgtaaccatacttgcttaaactatgtatgatgaaataatctcatgtatctttatcttttatacttttgtaggtttgata |
120 |
Q |
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| T |
42789698 |
ttatcattagaagctatagcatgtaaccatacttgcttaaactatgtatgatgaaataatctcatgtatctttatctt--atacttttgtaggtttgata |
42789601 |
T |
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| Q |
121 |
gagacttaaggtggagaactggtgtaaacatagtgccaattcactgcaacagatcaaacaattttcaaattacaccaaaagctttagaagcagcttacaa |
220 |
Q |
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| T |
42789600 |
gagacttaaggtggagaactggtgtaaacatagtgccaattcactgcaacagatcaaacaattttcaaattacaccaaaagctttagaagcagcttacaa |
42789501 |
T |
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| Q |
221 |
agaagcagaatcaatgaacacgaaa |
245 |
Q |
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|||||||||||||||||||| |||| |
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| T |
42789500 |
agaagcagaatcaatgaacatgaaa |
42789476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 21 - 245
Target Start/End: Complemental strand, 42799237 - 42799014
Alignment:
| Q |
21 |
ttatcattagaagctatagcatgtaaccatacttgcttaaactatgtatgatgaaataatctcatgtatctttatcttttatacttttgtaggtttgata |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42799237 |
ttatcattagaagctatagcatgtaaccatacttgcttaaactatgtatgatgaaataatctcatgtatctttatctt--atacttttgtaggtttgata |
42799140 |
T |
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| Q |
121 |
gagacttaaggtggagaactggtgtaaacatagtgccaattcactgcaacagatcaaacaattttcaaattacacc-aaaagctttagaagcagcttaca |
219 |
Q |
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| T |
42799139 |
gagacttaaggtggagaactggtgtaaacatagtgccaattcactgcaacagatcaaacaattttcaaattacaccaaaaagctttagaagcagcttaca |
42799040 |
T |
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| Q |
220 |
aagaagcagaatcaatgaacacgaaa |
245 |
Q |
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| T |
42799039 |
aagaagcagaatcaatgaacatgaaa |
42799014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 245
Target Start/End: Complemental strand, 34567289 - 34567149
Alignment:
| Q |
105 |
ttttgtaggtttgatagagacttaaggtggagaactggtgtaaacatagtgccaattcactgcaacagatcaaacaattttcaaattacaccaaaagctt |
204 |
Q |
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||||| || ||||||||||| || || ||||||||||||||||||||| | ||||| || || | || ||||||||||||||||| |||| |||| | |
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| T |
34567289 |
ttttgcagatttgatagagatttgagatggagaactggtgtaaacataattccaatccattgtgatagctcaaacaattttcaaatcacacttgaagcat |
34567190 |
T |
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| Q |
205 |
tagaagcagcttacaaagaagcagaatcaatgaacacgaaa |
245 |
Q |
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| T |
34567189 |
tagaaactgcatacaaaaatgcagaatccatgaacatgaaa |
34567149 |
T |
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