View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_low_75 (Length: 250)
Name: NF9290_low_75
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_low_75 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 41452550 - 41452316
Alignment:
| Q |
1 |
ttgttatgttagcaaatgttccattgggatcattgcaagagaagtttcaaaataagttgatggagtcaaaggatacaagaatgaagaccacatctgaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41452550 |
ttgttatgttagcaaatgttccattgggatcattgcaagagaagtttcaaaataagttgatggagtcaaaggatacaagaatgaagaccacatctgaaat |
41452451 |
T |
|
| Q |
101 |
tttaaggaacatgaggatccttaaactgcaaggatgggaaatgaagtttctatctaaaataactgcgctcagggacgctgaacaaggctggttgaaaaaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41452450 |
tttaaggaacatgaggatccttaaactgcaaggatgggaaatgaagtttctatctaaaataactgcgctcagggacgctgaacaaggctggttgaaaaaa |
41452351 |
T |
|
| Q |
201 |
tttctttatactaacgccgtgactacatttgtctt |
235 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
41452350 |
tttctttatactaacgccgtgactacatttgtctt |
41452316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 41439381 - 41439147
Alignment:
| Q |
1 |
ttgttatgttagcaaatgttccattgggatcattgcaagagaagtttcaaaataagttgatggagtcaaaggatacaagaatgaagaccacatctgaaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41439381 |
ttgttatgttagcaaatgttccattgggatcattacaagagaagtttcaaaaaaagttgatggagtcaaaggatacaagaatgaagaccacatctgaaat |
41439282 |
T |
|
| Q |
101 |
tttaaggaacatgaggatccttaaactgcaaggatgggaaatgaagtttctatctaaaataactgcgctcagggacgctgaacaaggctggttgaaaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41439281 |
tttaaggaacatgaggatccttaaactgcaaggatgggaaatgaagtttctatctaaaataactgcgctcagggacgctgaacaaggctggttgaaaaaa |
41439182 |
T |
|
| Q |
201 |
tttctttatactaacgccgtgactacatttgtctt |
235 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| |
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| T |
41439181 |
tttctttatactaacgccgttactacatttgtctt |
41439147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 14241533 - 14241302
Alignment:
| Q |
3 |
gttatgttagcaaatgttccattgggatcattgcaagagaagtttcaaaataagttgatggagtcaaaggatacaagaatgaagaccacatctgaaattt |
102 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||| ||||| |||||||||| |
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| T |
14241533 |
gttatgttggcaaatgttccattgggatcattgcaagagaagtttcaagataagttgatggagtcaaaggatgctagaatgaaaaccacgtctgaaattt |
14241434 |
T |
|
| Q |
103 |
taaggaacatgaggatccttaaactgcaaggatgggaaatgaagtttctatctaaaataactgcgctcagggacgctgaacaaggctggttgaaaaaatt |
202 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||| |
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| T |
14241433 |
taaggaacatgaggatccttaaactacaaggatgggaaatgaagtttctatctaaaataactgcactcagggatgccgaacaaggctggttgaaaaaata |
14241334 |
T |
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| Q |
203 |
tctttatactaacgccgtgactacatttgtct |
234 |
Q |
| |
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|||||| ||| ||| ||||||||||||||| |
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| T |
14241333 |
tctttacacttcagccatgactacatttgtct |
14241302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 14371786 - 14372018
Alignment:
| Q |
1 |
ttgttatgttagcaaatgttccattgggatcattgcaagagaagtttcaaaataagttgatggagtcaaaggatacaagaatgaagaccacatctgaaat |
100 |
Q |
| |
|
|||||||||| |||| | ||||| ||||||||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14371786 |
ttgttatgttggcaactcttccaacgggatcattccaagagaagttacataataagttgatggagtcaaaggatactagaatgaagaccacatctgaaat |
14371885 |
T |
|
| Q |
101 |
tttaaggaacatgaggatccttaaactgcaaggatgggaaatgaagtttctatctaaaataactgcgctcagggacgctgaacaaggctggttgaaaaaa |
200 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||||| ||||| ||||| || ||||||||||| |
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| T |
14371886 |
tttaagaaacatgaggatcctcaaactacaaggatgggaaatgaagtttctgtctaaaataactgagctcagagacgccgaacaggggtggttgaaaaag |
14371985 |
T |
|
| Q |
201 |
tttctttatactaacgccgtgactacatttgtc |
233 |
Q |
| |
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| |||||||||| ||| |||||||| |||||| |
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| T |
14371986 |
tatctttatacttccgctgtgactacgtttgtc |
14372018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 22751258 - 22751094
Alignment:
| Q |
1 |
ttgttatgttagcaaatgttccattgggatcattgcaagagaagtttcaaaataagttgatggagtcaaaggatacaagaatgaagaccacatctgaaat |
100 |
Q |
| |
|
|||| ||||| ||||||||||| || | ||| | | ||||||||||||||| |||||||||| |||| |||| |||||||||| |||||||||| || |
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| T |
22751258 |
ttgtaatgttggcaaatgttcctttagtgtcaatcctagagaagtttcaaaacaagttgatggcatcaagagataaaagaatgaaggccacatctgagat |
22751159 |
T |
|
| Q |
101 |
tttaaggaacatgaggatccttaaactgcaaggatgggaaatgaagtttctatctaaaataactg |
165 |
Q |
| |
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|||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||| ||||||| |
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| T |
22751158 |
tttaaggaacatgaggattctcaaacttcaaggatgggaaatgaagtttctgtctaagataactg |
22751094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 22727916 - 22727795
Alignment:
| Q |
24 |
ttgggatcattgcaagagaagtttcaaaataagttgatggagtcaaaggatacaagaatgaagaccacatctgaaattttaaggaacatgaggatcctta |
123 |
Q |
| |
|
|||| |||| ||||||||||||||||| |||||| ||||||| || |||| |||||||||| | || ||||| ||| ||| |||||||||||| |||| |
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| T |
22727916 |
ttggcatcactgcaagagaagtttcaagttaagttaatggagttcaaagataaaagaatgaaggcgacgtctgagattctaatgaacatgaggattctta |
22727817 |
T |
|
| Q |
124 |
aactgcaaggatgggaaatgaa |
145 |
Q |
| |
|
|||| |||| |||||| ||||| |
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| T |
22727816 |
aacttcaagcatgggagatgaa |
22727795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 22739072 - 22739188
Alignment:
| Q |
29 |
atcattgcaagagaagtttcaaaataagttgatggagtcaaaggatacaagaatgaagaccacatctgaaattttaaggaacatgaggatccttaaactg |
128 |
Q |
| |
|
|||| ||||||||||||||||| |||||| ||||| | || |||| |||||||||| | || ||||| ||| ||| |||||||||||| |||||||| |
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| T |
22739072 |
atcactgcaagagaagtttcaaggtaagttaatggaatttaaagataaaagaatgaaggcgacgtctgagattctaatgaacatgaggattcttaaactt |
22739171 |
T |
|
| Q |
129 |
caaggatgggaaatgaa |
145 |
Q |
| |
|
|||| |||||| ||||| |
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|
| T |
22739172 |
caagcatgggagatgaa |
22739188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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