View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_low_77 (Length: 250)
Name: NF9290_low_77
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_low_77 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 30001936 - 30001704
Alignment:
| Q |
1 |
atataaaaaggatttaagcagagagggttcaagtacttctccaaagaacactgcatcctttttcttctagacacattaaatagtggnnnnnnnatagtgt |
100 |
Q |
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| T |
30001936 |
atataaaaaggatttaa--agagagggttcgagtacctctccaaagaacactgcatcctttttattctagacacattaaatagtggttttattatggtgt |
30001839 |
T |
|
| Q |
101 |
ctcaaacccacatatttaagtgacatcatgaatatacaatagtcaatttgggggttaaaaggatggtagaccttgccggagattttctctcaacattacc |
200 |
Q |
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| T |
30001838 |
ctcaaacccacatatttaaatgacatcatgaatatgcaatagtcaatttgggggttaaaaggatggtagaccttgccggagattttctttcaacattacc |
30001739 |
T |
|
| Q |
201 |
tcatgttccacatttacaagccaccttgtttttgt |
235 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
30001738 |
tcatgatccacatttacaagccaccttgtttttgt |
30001704 |
T |
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