View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_low_80 (Length: 249)
Name: NF9290_low_80
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_low_80 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 49911336 - 49911584
Alignment:
| Q |
1 |
aagaagttaaaaacgtcggaaataacataaatggtaaaatctctttctttgcgagagtatggacactgtctgtcactt-acccctttgtatgataaaaac |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
49911336 |
aagaagttaaaaacgtcggaaataacataaatggtaaa-tctctttctttgcgagagtatggacactgtctgtcactttacccctttgtataataaaaac |
49911434 |
T |
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| Q |
100 |
aacttgaaagttacctttcaatgataatagggccctataaatggaaaaaatataaccatattctgagttatcagatttcgtcgtgcacatcatcaaacaa |
199 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
49911435 |
aacttgaaagttacctttcaatgataacagggccctataaatggaaaaaatataaccatattctgaattatcagatttcgtcgtgcacatcatcaaacaa |
49911534 |
T |
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| Q |
200 |
agcttatatcttccaccctgaggctgagattattcttcagacttaagttg |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49911535 |
agcttatatcttccaccctgaggctgagattattcttcagacttaagttg |
49911584 |
T |
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