View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_low_85 (Length: 243)
Name: NF9290_low_85
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_low_85 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 37787514 - 37787744
Alignment:
| Q |
1 |
cgatttgtaaattgttggagcaagtgagagagattaaataattgaaagtttatgtgtccatcttacaattaaaagtttaattgtattttagaacctaaag |
100 |
Q |
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| T |
37787514 |
cgatttgtaaattgttggagaaagtgagagagattaaataattgaaagtttatgtgtccatcttacaattaaaagtttaatagtattttagaacctaaat |
37787613 |
T |
|
| Q |
101 |
aatcaaattgaaaagaaaacgnnnnnnnggattaaa---tagtcgatttgttttatctttctttgattacgaggagggtcgaatcctgggaaatgagaac |
197 |
Q |
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| T |
37787614 |
aatcaaattgaaaagaaaacgaaaaaaaggattaaagagtagtagatttgttttttctttctttgattacgaggagggtcgaatcctgggaaatgagaac |
37787713 |
T |
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| Q |
198 |
tacaaaaccaccatactaggggtaagaaact |
228 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
37787714 |
tacaaaaccaccatactaggggtaagaaact |
37787744 |
T |
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