View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_low_88 (Length: 241)
Name: NF9290_low_88
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_low_88 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 42834716 - 42834938
Alignment:
| Q |
1 |
tgaaactcatcaattgcaaggtcagcttaaagtggcactggaaaatatggctaaatcagaattggagctggtttcagagagaaagaagaatcaaatgcta |
100 |
Q |
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| T |
42834716 |
tgaaactcatcaattgcaaggtcagcttaaagtggcactggaaaatatggctaaatcagaattggagctggtttcagagagaaagaagagtcaaatgcta |
42834815 |
T |
|
| Q |
101 |
ggagatttggttacagtgtatgaggataatgaaactaaccataagcaagatgtgcaaaaattgaactctgaaatgcttgatttgcaagctaagttctctt |
200 |
Q |
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| T |
42834816 |
ggagatttggttacagtgtatgaggataatgaaactaaacataagcaagatgtgcaaaaattgaactcggaaatgcttgatttgcaagctaagttctctt |
42834915 |
T |
|
| Q |
201 |
tggagaaagatgaactgaatttt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
42834916 |
tggagaaagatgaactgaatttt |
42834938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 42819582 - 42819650
Alignment:
| Q |
9 |
atcaattgcaaggtcagcttaaagtggcactggaaaatatggctaaatcagaattggagctggtttcag |
77 |
Q |
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|||||||| ||||||||||||||||||||| |||||||||||||| |||| |||||||| | ||||||| |
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| T |
42819582 |
atcaattggaaggtcagcttaaagtggcacaggaaaatatggctatatcaaaattggagttagtttcag |
42819650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 42819689 - 42819734
Alignment:
| Q |
128 |
aatgaaactaaccataagcaagatgtgcaaaaattgaactctgaaa |
173 |
Q |
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| T |
42819689 |
aatgaaactaaccataaccaagatgtgcaaaaattgaactcggaaa |
42819734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 12622306 - 12622366
Alignment:
| Q |
153 |
tgcaaaaattgaactctgaaatgcttgatttgcaagctaagttctctttggagaaagatga |
213 |
Q |
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| T |
12622306 |
tgcaaaaattgaactctcacatgtttgatttggaggctaagttctctttggagaaagatga |
12622366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 7364012 - 7363950
Alignment:
| Q |
5 |
actcatcaattgcaaggtcagcttaaagtggcactggaaaatatggctaaatcagaattggag |
67 |
Q |
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||||||| ||||||| |||||||||||| |||||| ||||||| ||||||| |||||||||| |
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| T |
7364012 |
actcatctattgcaaagtcagcttaaagcggcactaaaaaatattgctaaattagaattggag |
7363950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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