View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_low_89 (Length: 240)
Name: NF9290_low_89
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_low_89 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 29259719 - 29259896
Alignment:
| Q |
44 |
taatgatagagagaattaa--attttatctatttaatactttgtactccattttgaatacatttatatggtcaaacattaataattaagttgcaaaagag |
141 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29259719 |
taatgatagagagaatttataattttatctatttaatactttgtacttcattttgaatacatttatatggtcaaacattaataattaagttgcaaaagag |
29259818 |
T |
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| Q |
142 |
aaatgtatttattttttgagagaaaaagaggaatgtattaattgatcatgacagatggtaagtagcagccataaatgt |
219 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29259819 |
aaatgtatttattttttgagagaaaaagagaaatgtattaattgatcatgacagatggtaagtagcagccataaatgt |
29259896 |
T |
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