View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9290_low_95 (Length: 237)

Name: NF9290_low_95
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9290_low_95
NF9290_low_95
[»] chr3 (4 HSPs)
chr3 (1-218)||(1581074-1581283)
chr3 (5-208)||(3663627-3663832)
chr3 (3-214)||(41404026-41404236)
chr3 (48-104)||(9493734-9493790)
[»] chr1 (3 HSPs)
chr1 (1-211)||(32984463-32984673)
chr1 (2-164)||(3290553-3290715)
chr1 (5-91)||(44888160-44888246)
[»] chr7 (4 HSPs)
chr7 (1-211)||(30464342-30464552)
chr7 (1-210)||(39827443-39827652)
chr7 (27-211)||(8160752-8160940)
chr7 (2-93)||(40537781-40537872)
[»] chr6 (3 HSPs)
chr6 (1-211)||(19228344-19228552)
chr6 (133-211)||(14770716-14770794)
chr6 (1-37)||(35091865-35091901)
[»] chr2 (5 HSPs)
chr2 (1-211)||(17139756-17139965)
chr2 (1-164)||(9259451-9259610)
chr2 (65-164)||(39809383-39809482)
chr2 (1-130)||(31392354-31392483)
chr2 (130-210)||(37030818-37030898)
[»] chr5 (2 HSPs)
chr5 (27-157)||(11609545-11609675)
chr5 (53-175)||(12893096-12893218)
[»] chr8 (1 HSPs)
chr8 (5-107)||(12735392-12735496)


Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 1581074 - 1581283
Alignment:
Q  1 taaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttatcgtgaggcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1581074 taaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttatcgtgaggcg 1581173  T
Q  101 aattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatgggcaatgtccaactgggtttagttctctgatgttag 200  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||        ||||||    
T  1581174 aattcgtaagcagacgctcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatgagcaatgtccaactgggcttag--------tgttag 1581265  T
Q  201 ttgatgttatgtgggata 218  Q
    ||||||||||||||||||    
T  1581266 ttgatgttatgtgggata 1581283  T

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Target: chr3; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 3663832 - 3663627
Alignment:
Q  5 gatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttatcgtgaggcgaatt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||    
T  3663832 gatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaaaatttgtcattcttttcgtgaggcaaatt 3663733  T
Q  105 cgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatgggcaatgtcc--aactgggtttagttctctgatgttagtt 202  Q
     ||  ||||||| |||||||||||||| ||||||||||| |||||  ||| ||||||||| ||| |||||  |  | | || ||||||||||||||||||    
T  3663732 tgtgtgcagacgctcttgcaaacatggattgtgagcatgcgcctgatttgtgtgtgtatgagcagtgtccagatatagtttaagttctctgatgttagtt 3663633  T
Q  203 gatgtt 208  Q
    ||||||    
T  3663632 gatgtt 3663627  T

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Target: chr3; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 3 - 214
Target Start/End: Complemental strand, 41404236 - 41404026
Alignment:
Q  3 aggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttatcgtgaggcgaa 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||| ||||||||||| |||||| ||||    
T  41404236 aggatggaagtgttgttggttggcgtctcattcaagaaattcgccggttgcttgctctggagtgggacgtgaagatctgtcattcttaccgtgagacgaa 41404137  T
Q  103 ttcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatgggcaatgtccaactgggtttagttctctgatgttagtt 202  Q
    |||||  ||||||| |||| |||||||||||||||||  | |||||| ||||| ||||||||   | |||||| || |  ||||||||||| |||||| |    
T  41404136 ttcgtgtgcagacgctctttcaaacatgggttgtgag-ttatgcctgtgttgcatgtgtatgactagtgtccagctagacttagttctctggtgttagct 41404038  T
Q  203 gatgttatgtgg 214  Q
     |||||||||||    
T  41404037 tatgttatgtgg 41404026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 9493734 - 9493790
Alignment:
Q  48 gattgcttgctttggagtgggaagtgaagatttgtcattcttatcgtgaggcgaatt 104  Q
    |||||||| ||||  |||||||||| ||||| | ||||| |||||||||||||||||    
T  9493734 gattgcttactttaaagtgggaagttaagatgtatcattattatcgtgaggcgaatt 9493790  T

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Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 32984463 - 32984673
Alignment:
Q  1 taaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttatcgtgaggcg 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| |||||| |||||||||||||||||||    
T  32984463 taaggatggaagtgttgttggttggtgtctcattcaagaaatttgccgattgcttgctctggagtgggaagtggagatttatcattcttatcgtgaggcg 32984562  T
Q  101 aattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatgggcaatgtccaactgggtttagttctctgatgttag 200  Q
    ||||| |  ||||||| |||||| |||||||||||| |||| | | || ||||||||||||||| |||||||||| || || ||||||||||| ||||||    
T  32984563 aattcatgtgcagacgctcttgcgaacatgggttgtaagcacgcgtctaggttgcgtgtgtatgagcaatgtccagctaggcttagttctctggtgttag 32984662  T
Q  201 ttgatgttatg 211  Q
    |||||||||||    
T  32984663 ttgatgttatg 32984673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 164
Target Start/End: Original strand, 3290553 - 3290715
Alignment:
Q  2 aaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttatcgtgaggcga 101  Q
    ||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||| ||||||||| |||||||||||| ||||||||||||    
T  3290553 aaggatggaagtgttgttggttggcgtctcattcaagaatttcgtcaattgcttgctttggagttggaagtgaaaatttgtcattctaatcgtgaggcga 3290652  T
Q  102 attcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatg 164  Q
    |||| |  ||||||| || ||||||||||||||||||||||| ||||||||||||||||||||    
T  3290653 attcttgtgcagacgctcatgcaaacatgggttgtgagcatgcgcctgggttgcgtgtgtatg 3290715  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 44888160 - 44888246
Alignment:
Q  5 gatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttat 91  Q
    |||||||| ||||||||||  |||||||| ||||||||| | | |||| ||||||||||| | |||||||||||||||| |||||||    
T  44888160 gatggaagcgttgttggtttccgtctcatccaagaaatttgtctattgtttgctttggagcgagaagtgaagatttgtctttcttat 44888246  T

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Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 30464552 - 30464342
Alignment:
Q  1 taaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttatcgtgaggcg 100  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||  |||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  30464552 taagaatggaagtgttgttggttggcgtctcattgaagaaattcgcatattgcttgctctggagtgggaagtgaagatttgtcattcttatcatgaggcg 30464453  T
Q  101 aattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatgggcaatgtccaactgggtttagttctctgatgttag 200  Q
    |||||||  ||||||| |||||||||| ||||||||||||||| | | |||||||||||||||| | | |||||| || || ||| ||||||| ||||||    
T  30464452 aattcgtgtgcagacgctcttgcaaacttgggttgtgagcatgcgtcggggttgcgtgtgtatgagtagtgtccagctaggcttatttctctggtgttag 30464353  T
Q  201 ttgatgttatg 211  Q
     ||||||||||    
T  30464352 ctgatgttatg 30464342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 39827652 - 39827443
Alignment:
Q  1 taaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttatcgtgaggcg 100  Q
    |||||||||| |||||| ||||||||||||||||||||||||||  ||| || ||||| | |||||||| ||||| |||||||||||||||||||| |||    
T  39827652 taaggatggaggtgttgctggttggcgtctcattcaagaaattcctcgactgtttgctctagagtgggacgtgaaaatttgtcattcttatcgtgaagcg 39827553  T
Q  101 aattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatgggcaatgtccaactgggtttagttctctgatgttag 200  Q
    |||| ||  || |||| ||||||||||||  ||||||||||||  ||||||||||||||||||| ||| |||| |||| |  |||||| |||||||||||    
T  39827552 aatttgtgtgcggacgctcttgcaaacatttgttgtgagcatgctcctgggttgcgtgtgtatgagcagtgtcaaactagacttagttatctgatgttag 39827453  T
Q  201 ttgatgttat 210  Q
    ||||||||||    
T  39827452 ttgatgttat 39827443  T

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Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 27 - 211
Target Start/End: Complemental strand, 8160940 - 8160752
Alignment:
Q  27 gtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaa 126  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||| |||||||||    
T  8160940 gtctcattcaagaaattcgctgattgcttgctttggagtgggaagtgaagatttgtcattcttatcgtgaagcgaattcgtgtgcagacgctcttgcaaa 8160841  T
Q  127 catgggttgtgagcatgtgcctgggt----tgcgtgtgtatgggcaatgtccaactgggtttagttctctgatgttagttgatgttatg 211  Q
    ||||| ||||||||||| || || ||    ||| ||||| || ||| |||||| ||  | ||||||||||| |||||| ||||||||||    
T  8160840 catggattgtgagcatgcgcatgagttacatgcatgtgtctgagcagtgtccagctaagcttagttctctggtgttagctgatgttatg 8160752  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 40537872 - 40537781
Alignment:
Q  2 aaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttatcg 93  Q
    |||||||||||| ||||||||||| | ||||| ||| |||||||  ||||| | |||||||||||| || | ||  | ||||||||||||||    
T  40537872 aaggatggaagtcttgttggttggtgactcatccaaaaaattcgtagattgttagctttggagtggaaaattaaagtgtgtcattcttatcg 40537781  T

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Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 19228344 - 19228552
Alignment:
Q  1 taaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttatcgtgaggcg 100  Q
    |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||| ||||     
T  19228344 taaggatgaaagtgatgttggttggcgtctcattcaagaaattcaccgattgcttgctt-ggagtgggaagtgaagatt-gtcattcttatcgtaaggca 19228441  T
Q  101 aattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatgggcaatgtccaactgggtttagttctctgatgttag 200  Q
    |||||||  | ||||  | || ||||||| ||||||||||||| | | |||||||||||||||| ||||||||||||| || ||||||||||| ||||||    
T  19228442 aattcgtgtgtagacacttttccaaacataggttgtgagcatgcgacggggttgcgtgtgtatgagcaatgtccaactaggcttagttctctggtgttag 19228541  T
Q  201 ttgatgttatg 211  Q
     ||||||||||    
T  19228542 ctgatgttatg 19228552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 211
Target Start/End: Complemental strand, 14770794 - 14770716
Alignment:
Q  133 ttgtgagcatgtgcctgggttgcgtgtgtatgggcaatgtccaactgggtttagttctctgatgttagttgatgttatg 211  Q
    ||||||||||| | |||||||||||||||||| ||| |||| ||||  | | |||| | ||||||||| ||||||||||    
T  14770794 ttgtgagcatgcgactgggttgcgtgtgtatgtgcagtgtctaactaagctaagttatttgatgttagctgatgttatg 14770716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35091901 - 35091865
Alignment:
Q  1 taaggatggaagtgttgttggttggcgtctcattcaa 37  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  35091901 taaggatggaagtgttgttggttgacgtctcaatcaa 35091865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 17139965 - 17139756
Alignment:
Q  1 taaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttatcgtgaggcg 100  Q
    |||||||||||||||| ||||||||||||| |||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |    
T  17139965 taaggatggaagtgtt-ttggttggcgtctaattcaataaattcgccgattgctttctttgaagtgggaagtgaagatttgtcattcttatcgtgaggtg 17139867  T
Q  101 aattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatgggcaatgtccaactgggtttagttctctgatgttag 200  Q
    |||||||  ||||||  ||||||||||||||  ||||||||||  ||||||||||||||||||| ||| |||||| || |  | |||||| || ||||||    
T  17139866 aattcgtgtgcagacactcttgcaaacatggactgtgagcatgcacctgggttgcgtgtgtatgagcagtgtccagctagactaagttctatgttgttag 17139767  T
Q  201 ttgatgttatg 211  Q
     ||||||||||    
T  17139766 ctgatgttatg 17139756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 9259610 - 9259451
Alignment:
Q  1 taaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttatcgtgaggcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||| ||||||||||||||||||||||  || ||||    
T  9259610 taaggatggaagtgttgttggttggcgtctcattcaagaaattcgccga----gtgctttggagtggggagtgaagatttgtcattcttattatggggcg 9259515  T
Q  101 aattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatg 164  Q
    |||| ||  | ||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||    
T  9259514 aatttgtgtgtagacgctcttgcaaacatgggttatgagcatgcgcctgagttgcgtgtgtatg 9259451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 164
Target Start/End: Original strand, 39809383 - 39809482
Alignment:
Q  65 tgggaagtgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggttgcgtgtgtatg 164  Q
    ||||||||||| | |||||||||||||||||| ||||||||||  ||||||  ||||||||||||||||||||||||||  ||| |||||||||||||||    
T  39809383 tgggaagtgaaaaattgtcattcttatcgtgaagcgaattcgtgtgcagacactcttgcaaacatgggttgtgagcatgctcctaggttgcgtgtgtatg 39809482  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 31392354 - 31392483
Alignment:
Q  1 taaggatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgc-tttggagtgggaagtgaagatttgtcattcttatcgtgaggc 99  Q
    ||||||||||||| ||||||||||| ||||||||||||  ||||  ||||||||||| |||||||| |||||||||||||| || || |||| |||| ||    
T  31392354 taaggatggaagtattgttggttggtgtctcattcaag-gattcatcgattgcttgcttttggagtaggaagtgaagatttttcctttttattgtgatgc 31392452  T
Q  100 gaattcgtaagcagacgttcttgcaaacatg 130  Q
    |||||  |  ||| ||| |||||||||||||    
T  31392453 gaatttttgtgcatacgctcttgcaaacatg 31392483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 37030818 - 37030898
Alignment:
Q  130 gggttgtgagcatgtgcctgggttgcgtgtgtatgggcaatgtccaactgggtttagttctctgatgttagttgatgttat 210  Q
    |||||||||||||| | |||||||||||||||||| ||| ||| ||  | |||| | |||  || ||||||||||||||||    
T  37030818 gggttgtgagcatgcgtctgggttgcgtgtgtatgagcagtgttcagttaggttaaattcgatgttgttagttgatgttat 37030898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 27 - 157
Target Start/End: Complemental strand, 11609675 - 11609545
Alignment:
Q  27 gtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaa 126  Q
    |||||||| |||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  11609675 gtctcatttaagaaatttgccgattgcttgctttggagtgagaagtgaaaatttgtcattcttatcgtgaggcgaattcgtgtgcagacgctcttgcaaa 11609576  T
Q  127 catgggttgtgagcatgtgcctgggttgcgt 157  Q
    |||||||||| ||||| ||| ||||||||||    
T  11609575 catgggttgttagcatatgcatgggttgcgt 11609545  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 175
Target Start/End: Complemental strand, 12893218 - 12893096
Alignment:
Q  53 cttgctttggagtgggaagtgaagatttgtcattcttatcgtgaggcgaattcgtaagcagacgttcttgcaaacatgggttgtgagcatgtgcctgggt 152  Q
    |||||||||||||| ||||||||||||||||||||||||||||   | |||||||   |||||  | ||||||||||||||||| ||||||  |||| ||    
T  12893218 cttgctttggagtgagaagtgaagatttgtcattcttatcgtgtaccaaattcgtgtacagacacttttgcaaacatgggttgtaagcatgcacctgagt 12893119  T
Q  153 tgcgtgtgtatgggcaatgtcca 175  Q
    |||||||||||| ||| ||||||    
T  12893118 tgcgtgtgtatgagcagtgtcca 12893096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 12735496 - 12735392
Alignment:
Q  5 gatggaagtgttgttggttggcgtctcattcaagaaattcgccgattgcttgctttggagtgggaagtgaagatt--tgtcattcttatcgtgaggcgaa 102  Q
    |||| ||||||||||||||| |||||||||||| |||| || ||||| ||||||||| | |||||||| ||||||  ||| ||||||||||| ||||||     
T  12735496 gatgaaagtgttgttggttgacgtctcattcaaaaaatccgtcgattacttgctttgcactgggaagttaagatttgtgttattcttatcgtaaggcgag 12735397  T
Q  103 ttcgt 107  Q
    |||||    
T  12735396 ttcgt 12735392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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