View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_low_96 (Length: 237)
Name: NF9290_low_96
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_low_96 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 4121489 - 4121273
Alignment:
| Q |
7 |
aatttttaaaattttaactttgatcgttatctgcagtaaatttgtgtttttaaaacttgccaaacattgaagagaaagaatcattatccattgcagatgt |
106 |
Q |
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| T |
4121489 |
aatttttaaaattttaactttgatcgttatctgcagtaaatttgtgtttttaaaacttgccaaacattgaagagaaagaatcattatccattgcagatgt |
4121390 |
T |
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| Q |
107 |
acacatccttatcatatcaccaaatttttgaattgtactccgtgactgcgattgtagccacaatgtcagagtttgggaccaccacatcacaacaattgca |
206 |
Q |
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| T |
4121389 |
acacatccttatcatatcaccaaatttttgaattgtactccgtgactgcgattgtagccacaatgtcagagtttgggaccaccacatcacaacaattgca |
4121290 |
T |
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| Q |
207 |
attgtgtggcatcaact |
223 |
Q |
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| T |
4121289 |
attgtgtggcatcaact |
4121273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 4131359 - 4131230
Alignment:
| Q |
17 |
attttaactttgatcgttatctgcagtaaatttgtgtttttaaaacttgccaa---acattgaagagaaagaatcattatccattgcagatgtacacatc |
113 |
Q |
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| T |
4131359 |
atttgaactttcatcattttctgcagtaaatttgactttttaaaacctgctaataaacattgaagaaaaagaatcattatccattgcagatgtgtggatc |
4131260 |
T |
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| Q |
114 |
cttatcatatcaccaaatttttgaattgta |
143 |
Q |
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| T |
4131259 |
cttggcatattaccaaagttttaaattgta |
4131230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 222
Target Start/End: Original strand, 4363879 - 4364039
Alignment:
| Q |
68 |
aaacattgaagagaaagaatcattatccattgcagatgtacacatccttatcatatcaccaaatttttgaattgtactccgtgactgcgattgtagccac |
167 |
Q |
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| T |
4363879 |
aaacattgaagggaaagaaccattgtccattgcagatatatgtatccttatcagatgaccaaagttttaaattgtaatcctcgacttcaattgtagcctc |
4363978 |
T |
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| Q |
168 |
aatgtca--gagtttgggacc----accacatcacaacaattgcaattgtgtggcatcaac |
222 |
Q |
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| T |
4363979 |
aatatcaaggattttgagaccactgaccacatcacaacaatcacaattgtgtcgcatcaac |
4364039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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