View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9291_high_14 (Length: 226)
Name: NF9291_high_14
Description: NF9291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9291_high_14 |
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| [»] chr8 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 33081150 - 33080933
Alignment:
| Q |
6 |
aatcataacactgatcgtaaaggatttattactatcacaggattttctccattgctgactgaataaggtactatcatttcttggtttatacattcaaagt |
105 |
Q |
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| T |
33081150 |
aatcataacactgatcgtaaaggatttattactatcacaggattttctccattgct---tgaataaggtactatcatttcttagtttatacattcaaagt |
33081054 |
T |
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| Q |
106 |
ttaattaaaacaagttatatgcggaatttgagaaactatgattgtttcagttaattaattttgtgctcatctgaaaccaggctctagatacgatttctgt |
205 |
Q |
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| T |
33081053 |
ttaattaaaacaagttatatgcggaatttgagaaactatgattgtttcagttaattaattttgtgctcatgtaaaaccaggttctagatacgatttatgt |
33080954 |
T |
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| Q |
206 |
gatttagatttactcaattaa |
226 |
Q |
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| T |
33080953 |
gatttagatttactcagttaa |
33080933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 226
Target Start/End: Complemental strand, 33095675 - 33095481
Alignment:
| Q |
24 |
aaaggatttattactatcacaggattttctccattgctgactgaataaggtactatcatttcttggtttatacattcaaagtttaattaaaacaagttat |
123 |
Q |
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| T |
33095675 |
aaaggatttatcactatcactggattttctacgttgttgactgaataaggta---tcatttattactttaga--tttgaagtttaattaagacaagttat |
33095581 |
T |
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| Q |
124 |
atgcggaatttgagaaactatgattgtttcagttaattaattttgtgctcatctgaaaccaggctctagatacgatttctgtgatttagatttactcaat |
223 |
Q |
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| T |
33095580 |
--gcggaaat-gaggaactatgaatgtttcggttaattaatttcatgctcatgtaaaatcaggctctagattcaatttatgtgatttagatttactcaat |
33095484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 22765308 - 22765099
Alignment:
| Q |
10 |
ataacactgatcgtaaaggatttattactatcacaggattttctccattgctgactgaataaggtactatcatttcttggtttatacattcaaagtttaa |
109 |
Q |
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||||||||||||| ||||||||||| || ||||| | ||||||||| ||||||| ||| ||||||| |||||| || ||||| | |||||| ||||| |
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| T |
22765308 |
ataacactgatcgcaaaggatttatcaccatcactgaattttctccgttgctgattgattaaggta---tcatttattagttta--ccttcaaattttaa |
22765214 |
T |
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| Q |
110 |
ttaaaacaagttatatgcggaatttgagaaactatgattgtttcagttaattaattttgtgctcatctgaaaccaggctctagatacgatttctgtgatt |
209 |
Q |
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| T |
22765213 |
ttaaaacaa--tctatgcgaaatttgaggaactctgattgttttggttaattaatttcgtgcttatgtaaaatcaggctctagatacgatttatgtgatt |
22765116 |
T |
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| Q |
210 |
tagatttactcaattaa |
226 |
Q |
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| T |
22765115 |
tagatttactcaattaa |
22765099 |
T |
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