View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9291_low_1 (Length: 565)
Name: NF9291_low_1
Description: NF9291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9291_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 18 - 557
Target Start/End: Complemental strand, 13020990 - 13020448
Alignment:
| Q |
18 |
agtctgttgaagttcatcatctgattgaatacagtgccagcaacaggatgatacttcttcttcttcttcatactattgcttttgttgttcaattttctga |
117 |
Q |
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| T |
13020990 |
agtctgttgaagttcatcatctgattgaatacagtgccagcaacaggatgatacttcttcttcttc---atactattgcttttgttgttcaattttctga |
13020894 |
T |
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| Q |
118 |
gcagtagttgaaccaacaaaagagttaaagatgcagagaaagctgcaaaaagaaaaggatttgatagaaaatccatgatggattggaatagcatggtgga |
217 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13020893 |
gcagaagttgaaccaacaaaagagttaaagatgcagacaaagctgcaaaaagaagaggatttgatagaaaatccatgatggattggaatagcatggtgga |
13020794 |
T |
|
| Q |
218 |
gatggcgatggttttttgctttaaagaagaagttagtgttgctccagagtcaaagggttgcttgtttgcaatgtattgattctaaagnnnnnnnngtatt |
317 |
Q |
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| T |
13020793 |
ggtggcgatggttttttgctttaaagaagaagttagtgttgctccagagtcaaagggttgcttgtttgcaatgtattgattctaaagttttttttgtatt |
13020694 |
T |
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| Q |
318 |
gatcctaaagttgatactcattcaac------tatataataattgcacccttattataatttataaacggacgtgttatttgtagtaggtggctatctaa |
411 |
Q |
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| T |
13020693 |
gatcctaaagttgacactcattcaactatatatatataataattgcacccttattataatttataaacggacgtgttatttgtagtaggtgactatctaa |
13020594 |
T |
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| Q |
412 |
aagtgtaacagtacttgttctagaagaatgcattttaaattttaatagactggacctctctacnnnnnnnnnnnttaataatttttaattgactggacca |
511 |
Q |
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| T |
13020593 |
aagtgtaacagtacttgttctagaagaatgcattttaaattttaataaactggacctctctacaaaaataaaaattaataatttttaattgactggacca |
13020494 |
T |
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| Q |
512 |
gtaatgcaatccattgtcaactccagccattgaatgtaatcctttg |
557 |
Q |
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| T |
13020493 |
gtaatgcaatccattgtcaactccagccattgaatgtaatcctttg |
13020448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 13072853 - 13073136
Alignment:
| Q |
18 |
agtctgttgaagttcatcatctgattgaatacagtgccagcaacaggatgatacttcttcttcttcttcatactattgcttttgttgttcaattttctga |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||| |
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| T |
13072853 |
agtctgttgaaattcatcatctgattgaatacagtgccagcaacaggatgatactttttct---tcttcatgttattgcttttgttgttcaattttctga |
13072949 |
T |
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| Q |
118 |
gcagtagttgaaccaacaaaagagttaaagatgcagagaaagctgcaaaaagaaaaggatttgatagaaaatccatgatggattggaatagcatggtgga |
217 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13072950 |
gcagaagttgaaccaacaaaagagttaaagatgcagacaaagctgcaaaaagaaaaggatttgatagaaaatccatgatggattggaatagcatggtgga |
13073049 |
T |
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| Q |
218 |
gatggcgatggttttttgctttaaagaagaagttagtgttgctccagagtcaaagggttgcttgtttgcaatgtattgattctaaag |
304 |
Q |
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| T |
13073050 |
gatggcgatggttttttgctttaaagaagaagttagtgttactccagagtcaaagggttgcttgtttgcaatgtattgattctaaag |
13073136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 375
Target Start/End: Original strand, 13073122 - 13073188
Alignment:
| Q |
313 |
gtattgatcctaaagttgatactcattcaac----tatataataattgcacccttattataatttat |
375 |
Q |
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| T |
13073122 |
gtattgattctaaagttgacactcattcaactatatatataataattgctcccttattataatttat |
13073188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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