View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9291_low_12 (Length: 343)

Name: NF9291_low_12
Description: NF9291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9291_low_12
NF9291_low_12
[»] chr4 (6 HSPs)
chr4 (1-325)||(7874911-7875233)
chr4 (186-325)||(6780864-6781000)
chr4 (223-325)||(7870189-7870291)
chr4 (222-325)||(6787510-6787610)
chr4 (253-284)||(56221690-56221721)
chr4 (240-325)||(53586056-53586141)
[»] chr2 (2 HSPs)
chr2 (186-325)||(25471030-25471169)
chr2 (233-324)||(25465583-25465675)
[»] chr3 (3 HSPs)
chr3 (225-325)||(29186792-29186890)
chr3 (188-228)||(27756824-27756864)
chr3 (254-284)||(27751879-27751909)
[»] chr7 (1 HSPs)
chr7 (240-321)||(42842132-42842214)
[»] chr8 (2 HSPs)
chr8 (254-284)||(38984768-38984798)
chr8 (254-284)||(39015865-39015895)


Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 7874911 - 7875233
Alignment:
Q  1 attgtgtatatcatagactatacatgtttgtggcagttgtgttttataatattcaattttcaaagatggcttgcaatcgatgtcgccgtatatgtgtata 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7874911 attgtgtatatcatagaccatacatgtttgtggcagttgtgttttataatattcaattttcaaagatggcttgcaatcgatgtcgccgtatatgtgtata 7875010  T
Q  101 tattaatagttagacatacgatgttcaattgtgataaaaagtgagaatttcaaaattgaaaaatttcatcgattgcaatgatacaaacagccatataaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  7875011 tattaatagttagacatacgatgttcaattgtgataaaaagtgagaatttcaa--ttgaaaaatttcatcgattgcaatgatacaaacagccatataaca 7875108  T
Q  201 tatctaagaggctctgataccaattgaagagtttttaacagataatcaaatttatagatatgaaatatagcatgttattaattagtatcaattgacatat 300  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7875109 tatctaagaggctctgataccaattgaagagtttttaacaaataatcaaatttatagatatgaaatataacatgttattaattagtatcaattgacatat 7875208  T
Q  301 aaccgtgtaccttgaatggttgaag 325  Q
    |||||||||||||||||||||||||    
T  7875209 aaccgtgtaccttgaatggttgaag 7875233  T

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Target: chr4; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 186 - 325
Target Start/End: Complemental strand, 6781000 - 6780864
Alignment:
Q  186 aacagccatataacatatctaagaggctctgataccaattgaagagtttttaacagataatcaaatttatagatatgaaatatagcatgttattaattag 285  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6781000 aacagccatataacatatctataaggctctgataccaattgaagagtttt-aacagataatcaaatttatagatatgaaatatagcatgttattaattag 6780902  T
Q  286 tatcaattgacatataaccgtgtaccttgaatggttgaag 325  Q
    |||  ||||||||||||||||||||||||||| |||||||    
T  6780901 tat--attgacatataaccgtgtaccttgaattgttgaag 6780864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 223 - 325
Target Start/End: Original strand, 7870189 - 7870291
Alignment:
Q  223 attgaagagtttttaacagataatcaaatttatagatatgaaatatagcatgttattaattagtatcaattgacatataaccgtgtaccttgaatggttg 322  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7870189 attgaagagtttttaacagataaccaaatttatagatatgaaatatagcatgttattaattagtatcaattgacatataaccgtgtaccttgaatggttg 7870288  T
Q  323 aag 325  Q
    |||    
T  7870289 aag 7870291  T

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Target: chr4; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 222 - 325
Target Start/End: Complemental strand, 6787610 - 6787510
Alignment:
Q  222 aattgaagagtttttaacagataatcaaatttatagatatgaaatatagcatgttattaattagtatcaattgacatataaccgtgtaccttgaatggtt 321  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||    
T  6787610 aattgaagagtttt-aacagataatcaaatttatagatatgaaatatagcatgttattaattagtat--attgacatataaccgtgtaccttgaattgtt 6787514  T
Q  322 gaag 325  Q
    ||||    
T  6787513 gaag 6787510  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 284
Target Start/End: Original strand, 56221690 - 56221721
Alignment:
Q  253 tatagatatgaaatatagcatgttattaatta 284  Q
    ||||||||||||||||||||||||||||||||    
T  56221690 tatagatatgaaatatagcatgttattaatta 56221721  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 325
Target Start/End: Complemental strand, 53586141 - 53586056
Alignment:
Q  240 agataatcaaatttatagatatgaaatatagcatgttattaattagtatcaattgacat-ataaccgtgtaccttgaatggttgaag 325  Q
    |||||| |||||||| |||||||||||||||||||| |||||  ||||| ||||||| | | ||  ||| |||||||||||||||||    
T  53586141 agataaccaaatttacagatatgaaatatagcatgtaattaa-cagtattaattgacttcaaaagtgtgcaccttgaatggttgaag 53586056  T

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Target: chr2 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 186 - 325
Target Start/End: Original strand, 25471030 - 25471169
Alignment:
Q  186 aacagccatataacatatctaagaggctctgataccaattgaagagtttttaacagataatcaaattt-atagatatgaaatatagcatgttattaatta 284  Q
    |||||||||||||||||||||  ||| ||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  25471030 aacagccatataacatatctattaggttctgataccaattgaagagtttt-aacagataaccaaattttatagatatgaaatatagcatgttattaatta 25471128  T
Q  285 gtatcaattgacatataaccgtgtaccttgaatggttgaag 325  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25471129 gtatcaattgacatataaccgtgtaccttgaatggttgaag 25471169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 233 - 324
Target Start/End: Original strand, 25465583 - 25465675
Alignment:
Q  233 ttttaacagataatcaaattt-atagatatgaaatatagcatgttattaattagtatcaattgacatataaccgtgtaccttgaatggttgaa 324  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  25465583 ttttaacagataaccaaattttatagatatgaaatatagcatgttattaattagtatcaattgacatataaccatgtatcttgaatggttgaa 25465675  T

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Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 225 - 325
Target Start/End: Original strand, 29186792 - 29186890
Alignment:
Q  225 tgaagagtttttaacagataatcaaatttatagatatgaaatatagcatgttattaattagtatcaattgacatataaccgtgtaccttgaatggttgaa 324  Q
    |||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||    
T  29186792 tgaagaattttaaacaaataatcaaatttatagatatgaaatatagcatgttattaattagtat--attgacatataaccgtgtaccttgtatggttgaa 29186889  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 27756824 - 27756864
Alignment:
Q  188 cagccatataacatatctaagaggctctgataccaattgaa 228  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  27756824 cagccatataacatatctaattggctctgataccaattgaa 27756864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 284
Target Start/End: Original strand, 27751879 - 27751909
Alignment:
Q  254 atagatatgaaatatagcatgttattaatta 284  Q
    |||||||||||||||||||||||||||||||    
T  27751879 atagatatgaaatatagcatgttattaatta 27751909  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 321
Target Start/End: Original strand, 42842132 - 42842214
Alignment:
Q  240 agataatcaaatttatagatatgaaatatagcatgttattaattagtatcaattgacat-ataaccgtgtaccttgaatggtt 321  Q
    |||||| |||||||| ||||||||||||||||||||||||||   |||  ||||||||| ||||||||||||||| |||||||    
T  42842132 agataagcaaatttacagatatgaaatatagcatgttattaagcggtagtaattgacatcataaccgtgtaccttaaatggtt 42842214  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 284
Target Start/End: Original strand, 38984768 - 38984798
Alignment:
Q  254 atagatatgaaatatagcatgttattaatta 284  Q
    |||||||||||||||||||||||||||||||    
T  38984768 atagatatgaaatatagcatgttattaatta 38984798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 284
Target Start/End: Original strand, 39015865 - 39015895
Alignment:
Q  254 atagatatgaaatatagcatgttattaatta 284  Q
    |||||||||||||||||||||||||||||||    
T  39015865 atagatatgaaatatagcatgttattaatta 39015895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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