View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9291_low_16 (Length: 281)
Name: NF9291_low_16
Description: NF9291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9291_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 7 - 265
Target Start/End: Original strand, 33168516 - 33168774
Alignment:
| Q |
7 |
ttggtgttaatgagcatctcaaatttaagaacaactagtactcatcacaaaaatctaatgaactagtttggatataaatggatgcagaaagagaaagaat |
106 |
Q |
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| T |
33168516 |
ttggtgttaatgagcatctcaaacttaagaacaactagtactcatcacaaaaatctaatgaactagtttggatataaatggatgcagaaagagaaagaat |
33168615 |
T |
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| Q |
107 |
gcatcatatgcataagtaattatgtatacaaatataatcaaatgttgtaaaaattaccagcaaagtcaaagtatggaaacttgttatgtggcacaaagct |
206 |
Q |
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| T |
33168616 |
gcatcatatgcataagtaattatgtatacaaatataatcaaatgttgtaaaaattaccagcaaagtcaaagtatggaaacttgttatgtggcacaaagct |
33168715 |
T |
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| Q |
207 |
tgatgaatgaagaagagggttcaactcataggcattgggcacaactataccaatagatg |
265 |
Q |
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| T |
33168716 |
tgatgaatgaagaagagggttcaactcataggcatttggcacaactataccaatagatg |
33168774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 148 - 261
Target Start/End: Original strand, 33147513 - 33147626
Alignment:
| Q |
148 |
atgttgtaaaaattaccagcaaagtcaaagtatggaaacttgttatgtggcacaaagcttgatgaatgaagaagagggttcaactcataggcattgggca |
247 |
Q |
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| T |
33147513 |
atgttgtaaaaattaccagcaaagtcaaagtaaggaaacttgttatgtggaacaaagcttgatgattgaagaagagggttcaactcaaagtcatttggca |
33147612 |
T |
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| Q |
248 |
caactataccaata |
261 |
Q |
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| T |
33147613 |
caactataccaata |
33147626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 151 - 261
Target Start/End: Original strand, 33173112 - 33173222
Alignment:
| Q |
151 |
ttgtaaaaattaccagcaaagtcaaagtatggaaacttgttatgtggcacaaagcttgatgaatgaagaagagggttcaactcataggcattgggcacaa |
250 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| |
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| T |
33173112 |
ttgtaaaacttaccagcaaagtcaaagtaaggaaacttgttatgaggcacaaagcttgatgattgaagaagagggttcaactcaaaggcatttggcacaa |
33173211 |
T |
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| Q |
251 |
ctataccaata |
261 |
Q |
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||||||||||| |
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| T |
33173212 |
ctataccaata |
33173222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 33149665 - 33149731
Alignment:
| Q |
154 |
taaaaattaccagcaaagtcaaagtatggaaacttgttatgtggcacaaagcttgatgaatgaagaa |
220 |
Q |
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| T |
33149665 |
taaaaattacaagcaaagtcaaagtaaggaaacttgttatgtggcacaaagcttgatgaatgaagaa |
33149731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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