View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9291_low_18 (Length: 259)
Name: NF9291_low_18
Description: NF9291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9291_low_18 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 36206773 - 36207021
Alignment:
| Q |
11 |
gtgttgcatgccaaatggagcatccaaattatccagagcctcaactaaggtgtccccattttctttgtcattctcagcttccaaaatatcaaacgagtta |
110 |
Q |
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| T |
36206773 |
gtgttgcatgccaaatggagcatccaaattatccagagcctcaactaaggtgtccccattttctttgtcattctcagcttccaaaatatcaaacgagtta |
36206872 |
T |
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| Q |
111 |
tgtagctcaagactttggtcctccaaagcttcttgtgctccttgggacctgtaagcatagtttgggcagtaagtgttttagcttgagtgttgttcctagc |
210 |
Q |
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| T |
36206873 |
tgtagctcaagactttggtcctccaaagcttcttgtgctccttgggacctgtaagcatagtttgggcagtaagtgttttagcttgagtgttgttcctagc |
36206972 |
T |
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| Q |
211 |
tagtagatgttatgtggcttcgtgcataaccattggtgatgttgtagca |
259 |
Q |
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| T |
36206973 |
tagtagatgttatgtggcttcgtgcataaccattggtgatgttgtagca |
36207021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 400312 - 400394
Alignment:
| Q |
68 |
attttctttgtcattctcagcttccaaaatatcaaacgagttatgtagctcaagactttggtcctccaaagcttcttgtgctc |
150 |
Q |
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| T |
400312 |
attttccttgtcattctcatcctccaaaatatcaaaagagttacgcagctgaagactttgatcagccaaatcttcttgagctc |
400394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 10989487 - 10989405
Alignment:
| Q |
63 |
tccccattttctttgtcattctcagcttccaaaatatcaaacgagttatgtagctcaagactttggtcctccaaagcttcttg |
145 |
Q |
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| T |
10989487 |
tccccattttccttgtcattttcaacttccaaaatatcaaacgagttatgaagctcaagactttgatcctccaaagcttcttg |
10989405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 10989369 - 10989269
Alignment:
| Q |
159 |
ctgtaagcatagtttgggcagtaagtgttttagcttgagtgttgttcctagctagtagatgttatgtggcttcgtgcataaccattggtgatgttgtagc |
258 |
Q |
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| T |
10989369 |
ctgtaatcatagtttgggcagtatgtgttttggcttgattgttgttccttggtatcagatgttgtgtggcttcttgcgtatccatttgagatgttgtagc |
10989270 |
T |
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| Q |
259 |
a |
259 |
Q |
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| T |
10989269 |
a |
10989269 |
T |
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