View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9291_low_2 (Length: 479)

Name: NF9291_low_2
Description: NF9291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9291_low_2
NF9291_low_2
[»] chr1 (5 HSPs)
chr1 (1-468)||(33771084-33771551)
chr1 (1-316)||(33761803-33762118)
chr1 (1-316)||(33768397-33768712)
chr1 (411-468)||(33768274-33768331)
chr1 (377-468)||(33761685-33761778)
[»] chr2 (1 HSPs)
chr2 (124-316)||(28690516-28690708)
[»] chr4 (2 HSPs)
chr4 (130-319)||(41241025-41241214)
chr4 (125-242)||(49464341-49464458)
[»] chr7 (3 HSPs)
chr7 (125-243)||(19846022-19846140)
chr7 (125-308)||(29463813-29463996)
chr7 (125-243)||(19890978-19891096)
[»] chr8 (6 HSPs)
chr8 (133-316)||(26170986-26171169)
chr8 (205-316)||(2046921-2047032)
chr8 (197-261)||(2058075-2058139)
chr8 (125-316)||(1094176-1094367)
chr8 (142-285)||(26397066-26397209)
chr8 (205-261)||(1948540-1948596)


Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 33771551 - 33771084
Alignment:
Q  1 attgaatattcgaagaaagtaagagatttaggctttacattctttgagttattctcagaagctttaggcctggatccttcttaccttaagaaactggcct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33771551 attgaatattcgaagaaagtaagagatttaggctttacattctttgagatattctcagaagctttaggcctggatccttcttaccttaagaaattggcct 33771452  T
Q  101 caccaaatggacattttattgcgtgtcactactatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgatggtgacttcatgac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33771451 caccaaatggacattttattgcgtgtcactactatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgatggtgacttcatgac 33771352  T
Q  201 aattcttctacaagaccatattggcggtcttcaagttcttcatcaaaatcaatggattgatgttcctccagtgcatggatctcttatagtaaatattggt 300  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33771351 aattcttctacaagaccgtattggcggtcttcaagttcttcatcaaaatcaatggattgatgttcctccggtgcatggatctcttatagtaaatattggt 33771252  T
Q  301 gatcttctgcaggtaactaattttaaatgtgatgacttaaattataaaataatcaatatttatgtactttaatttcttgtgacattacattaatatttgt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33771251 gatcttctgcaggtaactaattttaaatgtgatgacttaaattataaaataatcaatatttatgtactttaatttcttgtgacattacattaatgtttgt 33771152  T
Q  401 gatttttaatgattacatatgtcaatcttgtttgcagcttgtaacaaatgacatgttcacaagtgttt 468  Q
    | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33771151 gttttttaatgattacatatatcaatcttgtttgcagcttgtaacaaatgacatgttcacaagtgttt 33771084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 33762118 - 33761803
Alignment:
Q  1 attgaatattcgaagaaagtaagagatttaggctttacattctttgagttattctcagaagctttaggcctggatccttcttaccttaagaaactggcct 100  Q
    ||||||||||| ||||||||||| | ||||||| ||||| |||||||| ||| ||||||||||||||||||  |||||||||| ||||  ||| ||  ||    
T  33762118 attgaatattcaaagaaagtaagggctttaggccttacaatctttgagctatactcagaagctttaggccttcatccttcttatcttacaaaattgctct 33762019  T
Q  101 caccaaatggacattttattgcgtgtcactactatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgatggtgacttcatgac 200  Q
    || || ||||||| ||| ||  |||||||||||||||| |||| |||||||| ||||||||||||||| |||| || ||||| |||  ||| ||||||||    
T  33762018 caacatatggacaatttcttctgtgtcactactatcctgcatgccctgaacccgaattaactatgggaacttcgaagcacaccgatattgatttcatgac 33761919  T
Q  201 aattcttctacaagaccatattggcggtcttcaagttcttcatcaaaatcaatggattgatgttcctccagtgcatggatctcttatagtaaatattggt 300  Q
    |||||||||||||||||| ||||| ||| |||||||||||||||| ||||||||| |||||||||||||| |||||||||||||| | |||||  |||||    
T  33761918 aattcttctacaagaccagattggtggttttcaagttcttcatcagaatcaatgggttgatgttcctccactgcatggatctcttgttgtaaacgttggt 33761819  T
Q  301 gatcttctgcaggtaa 316  Q
    |||||| |||||||||    
T  33761818 gatcttatgcaggtaa 33761803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 33768712 - 33768397
Alignment:
Q  1 attgaatattcgaagaaagtaagagatttaggctttacattctttgagttattctcagaagctttaggcctggatccttcttaccttaagaaactggcct 100  Q
    ||||||||||| ||||||||||||| ||||||||| ||| |||||||| ||||||||||||||||||||||  |||||||||| |||||  |  ||||||    
T  33768712 attgaatattcaaagaaagtaagagctttaggcttgacaatctttgagctattctcagaagctttaggccttcatccttcttatcttaaagatttggcct 33768613  T
Q  101 caccaaatggacattttattgcgtgtcactactatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgatggtgacttcatgac 200  Q
     |    ||||||| ||| ||  ||||||||||||||||||||| |||||||| ||||||||||||||| |||| || ||||| |||  ||| ||||||||    
T  33768612 tagactatggacaatttcttttgtgtcactactatcctccatgccctgaacccgaattaactatgggaacttctaagcacaccgatattgatttcatgac 33768513  T
Q  201 aattcttctacaagaccatattggcggtcttcaagttcttcatcaaaatcaatggattgatgttcctccagtgcatggatctcttatagtaaatattggt 300  Q
    |||||||||||||||||| || || |||||||||||||||||||| ||||||||| |  | ||||||||  | |||||||||||| ||||||| || ||     
T  33768512 aattcttctacaagaccagatcggtggtcttcaagttcttcatcagaatcaatgggtccacgttcctcctcttcatggatctcttgtagtaaacatcggc 33768413  T
Q  301 gatcttctgcaggtaa 316  Q
    ||||||||||||||||    
T  33768412 gatcttctgcaggtaa 33768397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 411 - 468
Target Start/End: Complemental strand, 33768331 - 33768274
Alignment:
Q  411 gattacatatgtcaatcttgtttgcagcttgtaacaaatgacatgttcacaagtgttt 468  Q
    |||||||| | ||||| || ||||||||||||||||||||||||||||||||||||||    
T  33768331 gattacatttatcaattttctttgcagcttgtaacaaatgacatgttcacaagtgttt 33768274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 468
Target Start/End: Complemental strand, 33761778 - 33761685
Alignment:
Q  377 ttgtgacattacattaatatttgtgatttttaatgatta--catatgtcaatcttgtttgcagcttgtaacaaatgacatgttcacaagtgttt 468  Q
    ||||||||| ||||  ||| ||||||| |||||||| ||  ||| | ||| |||  |||||||||| |||||||||||||||||||||||||||    
T  33761778 ttgtgacatgacatatatagttgtgatatttaatgaatatacatttatcattctcctttgcagcttataacaaatgacatgttcacaagtgttt 33761685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 124 - 316
Target Start/End: Complemental strand, 28690708 - 28690516
Alignment:
Q  124 tgtcactactatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgatggtgacttcatgacaattcttctacaagaccatattg 223  Q
    |||||||| || |||||||||||||||||||||||||||||||||  | | |||||||| ||   ||||||||| || || ||| | ||||| |||||||    
T  28690708 tgtcactattaccctccatgtcctgaacctgaattaactatgggaaataccaatcacacagacaatgacttcataactatacttttgcaagatcatattg 28690609  T
Q  224 gcggtcttcaagttcttcatcaaaatcaatggattgatgttcctccagtgcatggatctcttatagtaaatattggtgatcttctgcaggtaa 316  Q
    ||||  | |||||||||||| |  ||||||||||||||||  ||||  |  ||||| ||||| | ||||| |||||||||||| |||||||||    
T  28690608 gcggcttacaagttcttcatgacgatcaatggattgatgtaactcctatcaatggagctcttgtcgtaaacattggtgatcttttgcaggtaa 28690516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 130 - 319
Target Start/End: Original strand, 41241025 - 41241214
Alignment:
Q  130 tactatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgatggtgacttcatgacaattcttctacaagaccatattggcggtc 229  Q
    |||||||| | ||| |||||||| |||||||||||||||  | |||| ||||| ||| ||| ||||||||| || ||||| ||| | || || |  ||||    
T  41241025 tactatccacaatgccctgaaccagaattaactatgggaattgcaaaacacaccgattgtgccttcatgacgatacttcttcaaaatcaaatagagggtc 41241124  T
Q  230 ttcaagttcttcatcaaaatcaatggattgatgttcctccagtgcatggatctcttatagtaaatattggtgatcttctgcaggtaacta 319  Q
    |||||||||||||  | || | |||| |  |||||||||||||||||||| ||||| | ||||||||||| ||| | || ||||||||||    
T  41241125 ttcaagttcttcacgagaaccgatgggtcaatgttcctccagtgcatggagctcttgttgtaaatattggggatatcctacaggtaacta 41241214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 125 - 242
Target Start/End: Complemental strand, 49464458 - 49464341
Alignment:
Q  125 gtcactactatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgatggtgacttcatgacaattcttctacaagaccatattgg 224  Q
    |||||| |||||| || || ||||||||||| |||||||||||  || |||| || |||||| || ||||||||||| | ||||||||||||||  ||||    
T  49464458 gtcactgctatccaccgtgccctgaacctgagttaactatgggcactacaaagcatactgatagtaacttcatgacattacttctacaagaccaacttgg 49464359  T
Q  225 cggtcttcaagttcttca 242  Q
     |||||||||||||||||    
T  49464358 tggtcttcaagttcttca 49464341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 125 - 243
Target Start/End: Original strand, 19846022 - 19846140
Alignment:
Q  125 gtcactactatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgatggtgacttcatgacaattcttctacaagaccatattgg 224  Q
    ||||||||| ||| ||||| ||||||||||||||||||||||| | |  ||| || ||||||||| ||||||||||  | ||| |||| ||||| |||||    
T  19846022 gtcactactttccgccatgccctgaacctgaattaactatgggtgttggaaaacatactgatggtaacttcatgaccttacttttacaggaccaaattgg 19846121  T
Q  225 cggtcttcaagttcttcat 243  Q
     |||||| |||||||||||    
T  19846122 tggtcttgaagttcttcat 19846140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 308
Target Start/End: Original strand, 29463813 - 29463996
Alignment:
Q  125 gtcactactatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgatggtgacttcatgacaattcttctacaagaccatattgg 224  Q
    |||||| ||||||  ||||||| ||||||||||||||||||||  |  |    || |||||| ||  |||||||||| | ||||||||||||||  ||||    
T  29463813 gtcacttctatccaacatgtcccgaacctgaattaactatgggctcgaccgcgcatactgatagtaccttcatgacattacttctacaagaccaacttgg 29463912  T
Q  225 cggtcttcaagttcttcatcaaaatcaatggattgatgttcctccagtgcatggatctcttatagtaaatattggtgatcttct 308  Q
     |||||||||||||||||| || || ||||| |  | |||||||| || |||||| ||||| | ||||| || || ||||||||    
T  29463913 tggtcttcaagttcttcatgaagataaatgggtcaacgttcctccggtacatggagctcttgttgtaaacataggagatcttct 29463996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 243
Target Start/End: Original strand, 19890978 - 19891096
Alignment:
Q  125 gtcactactatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgatggtgacttcatgacaattcttctacaagaccatattgg 224  Q
    |||| ||||||||  ||||||||||||||||||||||||||||  || | || || || |||  |  |||||| ||| | ||||||||||| ||  ||||    
T  19890978 gtcattactatccagcatgtcctgaacctgaattaactatgggcactgccaaacataccgatactagcttcataacattacttctacaagatcaacttgg 19891077  T
Q  225 cggtcttcaagttcttcat 243  Q
     ||||||||||||||||||    
T  19891078 tggtcttcaagttcttcat 19891096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 316
Target Start/End: Original strand, 26170986 - 26171169
Alignment:
Q  133 tatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgatggtgacttcatgacaattcttctacaagaccatattggc-ggtctt 231  Q
    ||||| ||||||||||||||||||||||| ||||| || || |  |||||||||  ||  |||||||||||  |||||||||| || |||||| ||||||    
T  26170986 tatccaccatgtcctgaacctgaattaaccatgggtgcgtccacacacactgatcctgctttcatgacaatagttctacaagaaca-attggctggtctt 26171084  T
Q  232 caagttcttcatcaaaatcaatggattgatgttcctccagtgcatggatctcttatagtaaatattggtgatcttctgcaggtaa 316  Q
    ||||||||||   | ||||||||| || ||||| |||| ||||| ||| ||||| | || || || || |||||||| |||||||    
T  26171085 caagttcttcgagataatcaatggtttaatgttgctcctgtgcacggagctcttgttgtcaacataggagatcttctacaggtaa 26171169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 205 - 316
Target Start/End: Original strand, 2046921 - 2047032
Alignment:
Q  205 cttctacaagaccatattggcggtcttcaagttcttcatcaaaatcaatggattgatgttcctccagtgcatggatctcttatagtaaatattggtgatc 304  Q
    ||||||||||||||||| || ||||| ||||||||| || || || ||||||||||| |  | || || | ||||||||| ||||| ||| |||||||||    
T  2046921 cttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacctgtacctggatctctcatagttaatgttggtgatc 2047020  T
Q  305 ttctgcaggtaa 316  Q
    ||||||||||||    
T  2047021 ttctgcaggtaa 2047032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 261
Target Start/End: Original strand, 2058075 - 2058139
Alignment:
Q  197 tgacaattcttctacaagaccatattggcggtcttcaagttcttcatcaaaatcaatggattgat 261  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||| || || || |||||||||||    
T  2058075 tgacaatgcttctacaagaccatattggtggtctccaagttctttatgaagataaatggattgat 2058139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 316
Target Start/End: Original strand, 1094176 - 1094367
Alignment:
Q  125 gtcactactatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgatggtgacttcatgacaattcttctacaagaccatattgg 224  Q
    |||||| |||||| ||||| |||||||||||||||||||||||  |  | || || |||||| |    ||||||||| | ||||||||||||||  ||||    
T  1094176 gtcacttctatccaccatgccctgaacctgaattaactatgggctcgaccaagcatactgatagcactttcatgacattacttctacaagaccaacttgg 1094275  T
Q  225 cggtcttcaagttcttcatcaaaatcaatggattgatgttcctccagtgcatggatctcttatagtaaatattggtgatcttctgcaggtaa 316  Q
     ||||| |||||||||||| || || ||||| |  |  |||||||  | |||||| ||||| | ||||| || || |||||||| |||||||    
T  1094276 tggtctacaagttcttcatgaagataaatgggtcaacattcctccgatacatggagctcttgttgtaaacataggagatcttctacaggtaa 1094367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 285
Target Start/End: Original strand, 26397066 - 26397209
Alignment:
Q  142 tgtcctgaacctgaattaactatgggagcttcaaatcacactgatggtgacttcatgacaattcttctacaagaccatattggcggtcttcaagttcttc 241  Q
    ||||||||||| || ||||||||||| || || || |||||||||  ||  |||||| ||||  ||||||| || ||  | || ||||||||||||||||    
T  26397066 tgtcctgaaccagagttaactatgggtgcatccaagcacactgatcctggtttcatggcaatagttctacaggatcaattgggtggtcttcaagttcttc 26397165  T
Q  242 atcaaaatcaatggattgatgttcctccagtgcatggatctctt 285  Q
    || | ||||||||| || | ||| |||| ||||||||| |||||    
T  26397166 atgagaatcaatgggttaacgtttctcctgtgcatggagctctt 26397209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 1948596 - 1948540
Alignment:
Q  205 cttctacaagaccatattggcggtcttcaagttcttcatcaaaatcaatggattgat 261  Q
    |||||||||||||||||||| ||||| ||||||||| || || || |||||||||||    
T  1948596 cttctacaagaccatattggtggtctccaagttctttatgaagataaatggattgat 1948540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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