View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9291_low_22 (Length: 251)
Name: NF9291_low_22
Description: NF9291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9291_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 43920643 - 43920425
Alignment:
| Q |
18 |
tcttcaattgaatttctgggttcacaacacaaacccacttgttttttatattgtcttaagaaaaactcttatatttctatttataataatatcgttcaaa |
117 |
Q |
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| T |
43920643 |
tcttcaattgaatttctgggttcacaacacaaacccacttgttttttatattgtcttaagaaaaactcttatatttctatttataataatatcgttcaaa |
43920544 |
T |
|
| Q |
118 |
taagatgtatccatcctaattttgtcttgtgttttccatttttatcatgaatcatattcgagacgttcctctattttatccatcctaattgaatcctttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43920543 |
taagatgtatccatcctaattttgtcttgtgttttccatttttatcatgaatcatattcgagacgttcctctattttatccatcctaattgaatcctttg |
43920444 |
T |
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| Q |
218 |
ggttgtggttgacatctct |
236 |
Q |
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||||||||||||||||||| |
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| T |
43920443 |
ggttgtggttgacatctct |
43920425 |
T |
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