View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9291_low_25 (Length: 249)
Name: NF9291_low_25
Description: NF9291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9291_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 45126895 - 45126653
Alignment:
| Q |
1 |
ccatttgattggtgatgccccaatatatgaaaaaacctatggtgtgcgcagcaaaaagaaccatagataattgtccaagccagatatgatatttgatgct |
100 |
Q |
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| T |
45126895 |
ccatttgattggtgatgccccaatatatgaaaaaacctatggtgtgcgcagcaaaaagaaccatagataattgtccaagccagatatgatatttgatgct |
45126796 |
T |
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| Q |
101 |
tgactcagatgtgagaccaacaagacgcagaatggaagaccctcttgtaactggaaagaacaaaaatgcccaacatatgtttcctatgtaacctagtctc |
200 |
Q |
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| T |
45126795 |
tgactcagatgtgagtccaacaagacgcagaatggaagaccctcttgtaaccggaaagaacaaaaatgcccaacatatgtttcctatgtaacctagtctc |
45126696 |
T |
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| Q |
201 |
aaaaatacactcctgaacttcgcttcccatctacaaacaccaa |
243 |
Q |
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| T |
45126695 |
aaaaatacactcctgaacttcgcttcccatctacaaacaccaa |
45126653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 2 - 233
Target Start/End: Complemental strand, 45109698 - 45109467
Alignment:
| Q |
2 |
catttgattggtgatgccccaatatatgaaaaaacctatggtgtgcgcagcaaaaagaaccatagataattgtccaagccagatatgatatttgatgctt |
101 |
Q |
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| T |
45109698 |
catttggttagtgatggcccaataaatgataaaaccaatggaatgagcagcaaagagaaccatagataattgtccaagccagatatgatacttgatgctt |
45109599 |
T |
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| Q |
102 |
gactcagatgtgagaccaacaagacgcagaatggaagaccctcttgtaactggaaagaacaaaaatgcccaacatatgtttcctatgtaacctagtctca |
201 |
Q |
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| T |
45109598 |
gactcagatgtgagtccaacaagaggcagaatagaagacattcttgtgactggaaagaacaaaaatgccaaacatatgtttcctatgtaagcaagtctca |
45109499 |
T |
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| Q |
202 |
aaaatacactcctgaacttcgcttcccatcta |
233 |
Q |
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| T |
45109498 |
aagatacactcctcaactttgcttcccatcta |
45109467 |
T |
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