View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9291_low_28 (Length: 244)
Name: NF9291_low_28
Description: NF9291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9291_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 24120449 - 24120230
Alignment:
| Q |
1 |
attgcagaaaggaagtcctcgtgacccgaagttggatcaagaagtatgtaaagtctaactaaatattgtttcaaccaggattcaatttcggggttctctc |
100 |
Q |
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| T |
24120449 |
attgcagaaaggaagtcctcgtgacccgaagttggatcaagaagtatgtaaagtctaactaaatattgtttcaaacaggattcaatttcggg-ttctctc |
24120351 |
T |
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| Q |
101 |
tccaaaatnnnnnnntcattgaatgaagcatggttgttgtcaaattaataatttttaattggtactaatcacacttctttatatctgcatgtacatggca |
200 |
Q |
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| T |
24120350 |
tccaaaa-aaaaaaatcattgaatgaagcatggttgttgtcaaattaataatttttaattggtactaattatacttctttatatctgcatgtacatggca |
24120252 |
T |
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| Q |
201 |
ggaagtacaactgttcatgcta |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
24120251 |
ggaagtacaactgttcatgcta |
24120230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 226
Target Start/End: Complemental strand, 24124978 - 24124885
Alignment:
| Q |
134 |
ttgttgtcaaattaataatttttaattggtactaatcacacttct-ttatatctgcatgtacatggcaggaagtacaactgttcatgctaattt |
226 |
Q |
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| T |
24124978 |
ttgttatcaagttaataattttgaatatgtactaattactcctttattatatgtgcatgtacatggcaggaagtagatctgttcaggctaattt |
24124885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 24144182 - 24144135
Alignment:
| Q |
179 |
ttatatctgcatgtacatggcaggaagtacaactgttcatgctaattt |
226 |
Q |
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| T |
24144182 |
ttatatgtgcatgtacatggcaggaagtagatctgttcaggctaattt |
24144135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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