View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9291_low_33 (Length: 231)

Name: NF9291_low_33
Description: NF9291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9291_low_33
NF9291_low_33
[»] chr4 (3 HSPs)
chr4 (1-231)||(34763305-34763535)
chr4 (1-231)||(34780577-34780807)
chr4 (1-231)||(34755329-34755559)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 34763535 - 34763305
Alignment:
Q  1 ccgaagaggttagagatattgctcgtgatgttcttaagatctttggagaatatagtgttacaaactttatttggcctttgaacaagtttaagtttggaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34763535 ccgaagaggttagagatattgctcgtgatgttcttaagatctttggagaatatagtgttacaaactttatttggcctttgaacaagtttaagtttggaaa 34763436  T
Q  101 ctatgacaagagaactgaggagattttcaataagtatgatcctatcattgaaaaggttatcaagaaacgacaagagattgtgaacaaaagaaaaaatgga 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34763435 ctatgataagagaactgaggagattttcaataagtatgatcctatcattgaaaaggttatcaagaaacgacaagagattgtgaacaaaagaaaaaatgga 34763336  T
Q  201 gaaatcgtagagggcgagcagaatgttgttt 231  Q
    ||||||||||| |||||||||||||||||||    
T  34763335 gaaatcgtagaaggcgagcagaatgttgttt 34763305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 34780577 - 34780807
Alignment:
Q  1 ccgaagaggttagagatattgctcgtgatgttcttaagatctttggagaatatagtgttacaaactttatttggcctttgaacaagtttaagtttggaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34780577 ccgaagaggttagagatattgctcgtgatgttcttaagatctttggagaatatagtgttacaaactttatttggcctttgaacaagtttaagtttggaaa 34780676  T
Q  101 ctatgacaagagaactgaggagattttcaataagtatgatcctatcattgaaaaggttatcaagaaacgacaagagattgtgaacaaaagaaaaaatgga 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34780677 ctatgataagagaactgaggagattttcaataagtatgatcctatcattgaaaaggttatcaagaaacgacaagagattgtgaacaaaagaaaaaatgga 34780776  T
Q  201 gaaatcgtagagggcgagcagaatgttgttt 231  Q
    ||||||||||| |||||||||||||||||||    
T  34780777 gaaatcgtagatggcgagcagaatgttgttt 34780807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 34755559 - 34755329
Alignment:
Q  1 ccgaagaggttagagatattgctcgtgatgttcttaagatctttggagaatatagtgttacaaactttatttggcctttgaacaagtttaagtttggaaa 100  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||    
T  34755559 ccgaagaggttagagatattgctcgcgatgttcttgagatctttggagaatatagtgttacaaacttcatatggccattgaacaagtttaagtttggaaa 34755460  T
Q  101 ctatgacaagagaactgaggagattttcaataagtatgatcctatcattgaaaaggttatcaagaaacgacaagagattgtgaacaaaagaaaaaatgga 200  Q
    |||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34755459 ctatgagaagagaattgacgagattttcaataagtatgatcctatcattgaaaaggttatcaagaaacgacaagagattgtgaacaaaagaaaaaatgga 34755360  T
Q  201 gaaatcgtagagggcgagcagaatgttgttt 231  Q
    |||||| ||||||||||||||| ||| ||||    
T  34755359 gaaatcatagagggcgagcagagtgtagttt 34755329  T

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