View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9291_low_34 (Length: 229)
Name: NF9291_low_34
Description: NF9291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9291_low_34 |
 | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0015 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 2 - 213
Target Start/End: Complemental strand, 24884 - 24673
Alignment:
| Q |
2 |
tagtggagaagcagagagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaattcaagatacaaaactaatcgt |
101 |
Q |
| |
|
||||| ||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24884 |
tagtgcagatgcagaaagcagagcaaaagagatcaagaaacttcatgaacaggttcgacaacggataatcaagcaaaattcaagatacaaaactaatcgt |
24785 |
T |
|
| Q |
102 |
gacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgctcaaagaacgatttcccaaacaaccaaatgccaagttgtcac |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24784 |
gacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgctcaaagaacgatttcccaaacaaccaaatgccaagttgtcac |
24685 |
T |
|
| Q |
202 |
caagagctgatg |
213 |
Q |
| |
|
|||||||||||| |
|
|
| T |
24684 |
caagagctgatg |
24673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 213
Target Start/End: Original strand, 91206 - 91417
Alignment:
| Q |
2 |
tagtggagaagcagagagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaattcaagatacaaaactaatcgt |
101 |
Q |
| |
|
||||| ||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
91206 |
tagtgcagatgcagaaagtagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaattcaagatacaaaactaatcgt |
91305 |
T |
|
| Q |
102 |
gacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgctcaaagaacgatttcccaaacaaccaaatgccaagttgtcac |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
91306 |
gacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcccaaacaaccaaatgccaagttgtcac |
91405 |
T |
|
| Q |
202 |
caagagctgatg |
213 |
Q |
| |
|
|||||||||||| |
|
|
| T |
91406 |
caagagctgatg |
91417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 213
Target Start/End: Complemental strand, 16773139 - 16772928
Alignment:
| Q |
2 |
tagtggagaagcagagagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaattcaagatacaaaactaatcgt |
101 |
Q |
| |
|
||||| ||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16773139 |
tagtgcagatgcagaaagtagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaattcaagatacaaaactaatcgt |
16773040 |
T |
|
| Q |
102 |
gacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgctcaaagaacgatttcccaaacaaccaaatgccaagttgtcac |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16773039 |
gacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcccaaacaaccaaatgccaagttgtcac |
16772940 |
T |
|
| Q |
202 |
caagagctgatg |
213 |
Q |
| |
|
|||||||||||| |
|
|
| T |
16772939 |
caagagctgatg |
16772928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 73 - 213
Target Start/End: Original strand, 32707702 - 32707842
Alignment:
| Q |
73 |
agcaaaattcaagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgctcaaagaacgatt |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32707702 |
agcaaaattcaagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatt |
32707801 |
T |
|
| Q |
173 |
tcccaaacaaccaaatgccaagttgtcaccaagagctgatg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32707802 |
tcccaaacaaccaaatgccaagttgtcaccaagagctgatg |
32707842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 26243235 - 26243421
Alignment:
| Q |
23 |
agcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaattcaagatacaaaactaatcgtgacaagcacagaaagcaacaa |
122 |
Q |
| |
|
||||||||| |||| ||||| ||| |||||||| | | |||||||| || ||||| || |||||||| |||||||| |||| | ||| ||| ||| || |
|
|
| T |
26243235 |
agcaaaagaaatcagtaaacttcataaacaggtttaagagcggataattaaacaaaactctagatacaagactaatcgagacatgtacaaaaatcaataa |
26243334 |
T |
|
| Q |
123 |
atctttaaagttggagatttggtatggatacatttgctcaaagaacgatttcccaaacaaccaaatgccaagttgtcaccaagagct |
209 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| | ||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
26243335 |
atctttaaagttggagatttggtacgggtacatattctcaaagaacgattttgaaaacaaccaaatgtcaagttgtcaccaagagct |
26243421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 32707660 - 32707701
Alignment:
| Q |
2 |
tagtggagaagcagagagcagagcaaaagagatcaagaaact |
43 |
Q |
| |
|
||||| ||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
32707660 |
tagtgcagatgcagaaagcagagcaaaagagatcaagaaact |
32707701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 213
Target Start/End: Complemental strand, 2791248 - 2791037
Alignment:
| Q |
2 |
tagtggagaagcagagagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaattcaagatacaaaactaatcgt |
101 |
Q |
| |
|
||||| ||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2791248 |
tagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacatgttcgacaacggataatcaagcaaaattcaagatacaaaactaatcgt |
2791149 |
T |
|
| Q |
102 |
gacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgctcaaagaacgatttcccaaacaaccaaatgccaagttgtcac |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2791148 |
gacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttacgcaaagaacgatttcccaaacaaccaaatgccaagttgtcac |
2791049 |
T |
|
| Q |
202 |
caagagctgatg |
213 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2791048 |
caagagctgatg |
2791037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 2 - 213
Target Start/End: Complemental strand, 14472230 - 14472019
Alignment:
| Q |
2 |
tagtggagaagcagagagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaattcaagatacaaaactaatcgt |
101 |
Q |
| |
|
||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14472230 |
tagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggtttgacaacggataatcaagcaaaatttaagatacaaaactaatcgt |
14472131 |
T |
|
| Q |
102 |
gacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgctcaaagaacgatttcccaaacaaccaaatgccaagttgtcac |
201 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| | ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14472130 |
gacaagcacagaaagcaacaaatctttaacgttggagatttggtatgggtacattttcgcaaagaacgatttcctaaacaaccaaatgccaagttgtcac |
14472031 |
T |
|
| Q |
202 |
caagagctgatg |
213 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14472030 |
caagagctgatg |
14472019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 2 - 213
Target Start/End: Original strand, 14026432 - 14026644
Alignment:
| Q |
2 |
tagtggagaagcagagagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaattcaagatacaaaactaatcgt |
101 |
Q |
| |
|
||||| ||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14026432 |
tagtgcagatgcagaaagcagggcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaattcaagatacaaaactaatcgt |
14026531 |
T |
|
| Q |
102 |
gacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgctcaaagaacgatttcccaaacaaccaaatg-ccaagttgtca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14026532 |
gacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcccaaacaaccaaatgcccaagttgtcc |
14026631 |
T |
|
| Q |
201 |
ccaagagctgatg |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
14026632 |
ccaagagctgatg |
14026644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 213
Target Start/End: Original strand, 45166620 - 45166698
Alignment:
| Q |
135 |
ggagatttggtatggatacatttgctcaaagaacgatttcccaaacaaccaaatgccaagttgtcaccaagagctgatg |
213 |
Q |
| |
|
||||| ||||||||||| || | || || ||||||||||| || |||||||||||||||| || ||||||||||||| |
|
|
| T |
45166620 |
ggagacttggtatggatccactagcgaaaggaacgatttcctaacaaaccaaatgccaagttatctccaagagctgatg |
45166698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 2 - 213
Target Start/End: Complemental strand, 5378701 - 5378490
Alignment:
| Q |
2 |
tagtggagaagcagagagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaattcaagatacaaaactaatcgt |
101 |
Q |
| |
|
||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5378701 |
tagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataattaagcaaaattcaagatacaaaactaatcgt |
5378602 |
T |
|
| Q |
102 |
gacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgctcaaagaacgatttcccaaacaaccaaatgccaagttgtcac |
201 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5378601 |
gacaagcacagaagacaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcctaaacaaccaaatgccaagttgtcac |
5378502 |
T |
|
| Q |
202 |
caagagctgatg |
213 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5378501 |
caagagctgatg |
5378490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 13719805 - 13719619
Alignment:
| Q |
25 |
caaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaattcaagatacaaaactaatcgtgacaagcacagaaagcaacaaat |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13719805 |
caaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaattcaagatacaaaactaatcgtgacaagcacagaaagcaacaaat |
13719706 |
T |
|
| Q |
125 |
ctttaaagttggagatttggtatggatacatttgctcaaagaacgatttcccaaacaaccaaatgccaagttgtcaccaagagctga |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13719705 |
ctttaaagttggagatttggtatggatacatttgcgcaaaaaacgatttcccaaacaaccaaatgccaagttgtcaccaagagctga |
13719619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 2 - 213
Target Start/End: Original strand, 11716009 - 11716220
Alignment:
| Q |
2 |
tagtggagaagcagagagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaattcaagatacaaaactaatcgt |
101 |
Q |
| |
|
||||| ||| ||||| || |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11716009 |
tagtgcagatgcagaaagtagagcaaatgagatcaagaaactgcatgaacaggtttgacaacggataatcaagcaaaattcaagatacaaaactaatcgt |
11716108 |
T |
|
| Q |
102 |
gacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgctcaaagaacgatttcccaaacaaccaaatgccaagttgtcac |
201 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11716109 |
gacaagcacataaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgattttccaaacaaccaaatgccaagttgtcac |
11716208 |
T |
|
| Q |
202 |
caagagctgatg |
213 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11716209 |
caagagctgatg |
11716220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 13166434 - 13166635
Alignment:
| Q |
12 |
gcagagagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaattcaagatacaaaactaatcgtgacaagcaca |
111 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13166434 |
gcagaaagtagagcaaaagagatcaagaaactgcatgaacaggttcgacaacagacaaataagcaaaattcatgatacaaaactaatcgtgacaagcaca |
13166533 |
T |
|
| Q |
112 |
gaaagcaacaaatctttaaagttggagatttggtatggatacatttgctcaaagaacgatttcccaaacaaccaaatgccaagttgtcaccaagagctga |
211 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13166534 |
aaagacaaaaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcccaaacaaccaaatggcaagttgtcaccaagagctga |
13166633 |
T |
|
| Q |
212 |
tg |
213 |
Q |
| |
|
|| |
|
|
| T |
13166634 |
tg |
13166635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 25481429 - 25481376
Alignment:
| Q |
26 |
aaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaa |
79 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||| |||||| |||||||| |
|
|
| T |
25481429 |
aaaagagatcaagaaactgcatgaacatgttcgaaaactgataattaagcaaaa |
25481376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 25499889 - 25499845
Alignment:
| Q |
26 |
aaaagagatcaagaaactgcatgaacaggttcgacaacggataat |
70 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| ||| |||||| |
|
|
| T |
25499889 |
aaaagagataaagaaactgcatgaacatgttcgaaaactgataat |
25499845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 73 - 213
Target Start/End: Original strand, 12842424 - 12842564
Alignment:
| Q |
73 |
agcaaaattcaagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgctcaaagaacgatt |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12842424 |
agcaaaattcaagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatt |
12842523 |
T |
|
| Q |
173 |
tcccaaacaaccaaatgccaagttgtcaccaagagctgatg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12842524 |
tcccaaacaaccaaatgccaagttgtcaccaagagctgatg |
12842564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 12842382 - 12842423
Alignment:
| Q |
2 |
tagtggagaagcagagagcagagcaaaagagatcaagaaact |
43 |
Q |
| |
|
||||| ||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
12842382 |
tagtgcagatgcagaaagcagagcaaaagagatcaagaaact |
12842423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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