View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9291_low_4 (Length: 477)
Name: NF9291_low_4
Description: NF9291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9291_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 48053461 - 48053923
Alignment:
| Q |
1 |
aggattgagattcatgaggatgctgcactgtatgagcagaaataccaaacgagaaaggacccctaacnnnnnnnnn-gccgagataggattaggaatcat |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
48053461 |
aggattgagattcatgaggatgctgcactgtatgagcagaaataccaaacgagaaaggacccctaacaaaaaaaaaagccgagataggattagatatcat |
48053560 |
T |
|
| Q |
100 |
taaagagagagagttgggctagcaagctaaatgaatgctacattatacataacattataggatcgtgcataagtggttagcaatctctaagcttgcaagt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48053561 |
taaagagagagagttgggctagcaagctaaatgaatgctacattatacataacattataggatcgtgcataagtggttagcaatctctaaccttgcaagt |
48053660 |
T |
|
| Q |
200 |
tgtggtttcgtaaagttgagtcaagtccaacttaaattttatcatagaatgcaaaatgtaacttactttagttgtcaaatgcaaaatgtaggacttccca |
299 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48053661 |
tgtggttttgtaaagttgagtcaagtccaacttaaattttatcatagaatgcaaaatgtaacttactttagttgtcaaatgcaaaatgtaggacttccca |
48053760 |
T |
|
| Q |
300 |
cttatgaaatatcagaacaatatcctttgtatcttttcattgtc-tcgatgaattcaattttttactgtgagaaaattagagatccattgcataaaatac |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48053761 |
cttatgaaatatcagaacaatatcctttgtatcttttcattgtcttcgatgaattcaattttttactgtgagaaaattagagatccattgcataaaatac |
48053860 |
T |
|
| Q |
399 |
aatgaggttattgcaactaacatcagagtttcattcctttatcaaaatttaaaggaagagttc |
461 |
Q |
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| T |
48053861 |
agtgaggttattgcaactaacatcagagtttcattcctttatcaaaatttaaaggaagagttc |
48053923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 333 - 447
Target Start/End: Original strand, 48039558 - 48039673
Alignment:
| Q |
333 |
ttttcattgtctc-gatgaattcaattttttactgtgagaaaattagagatccattgcataaaatacaatgaggttattgcaactaacatcagagtttca |
431 |
Q |
| |
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|||||||||||| ||||||||||||| || ||||| ||||| ||| ||||| ||||||||||||| ||||||||||||| ||||| |||||||| |
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| T |
48039558 |
ttttcattgtctttgatgaattcaattgttaactgtaggaaaagaagatatccaatgcataaaatacagtgaggttattgcagttaacagttgagtttca |
48039657 |
T |
|
| Q |
432 |
ttcctttatcaaaatt |
447 |
Q |
| |
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|||||||||| ||||| |
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| T |
48039658 |
ttcctttatcgaaatt |
48039673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 333 - 438
Target Start/End: Original strand, 48052532 - 48052638
Alignment:
| Q |
333 |
ttttcattgtctc-gatgaattcaattttttactgtgagaaaattagagatccattgcataaaatacaatgaggttattgcaactaacatcagagtttca |
431 |
Q |
| |
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|||||||||||| |||||||||||||||| ||||| ||||| || |||||| ||||||||||||| ||||||||||||| ||||| |||||||| |
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| T |
48052532 |
ttttcattgtctttgatgaattcaatttttaactgtaggaaaagaagcgatccaatgcataaaatacagtgaggttattgcagttaacagttgagtttca |
48052631 |
T |
|
| Q |
432 |
ttccttt |
438 |
Q |
| |
|
||||||| |
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|
| T |
48052632 |
ttccttt |
48052638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 447
Target Start/End: Original strand, 48034160 - 48034275
Alignment:
| Q |
333 |
ttttcattgtctc-gatgaattcaattttttactgtgagaaaattagagatccattg-cataaaatacaatgaggttattgcaactaacatcagagtttc |
430 |
Q |
| |
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|||||||||||| |||||||||| ||||||||||| ||||| ||||||||| || ||||||| || ||||||||||||| |||||||| |||||| |
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| T |
48034160 |
ttttcattgtctttgatgaattcagttttttactgtaagaaacaaagagatccaatgtcataaaaaac--tgaggttattgcagctaacatctgagtttt |
48034257 |
T |
|
| Q |
431 |
attcc-tttatcaaaatt |
447 |
Q |
| |
|
|||| |||||||||||| |
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|
| T |
48034258 |
cttccttttatcaaaatt |
48034275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 267
Target Start/End: Original strand, 48047825 - 48047931
Alignment:
| Q |
169 |
taagtggttagcaatctctaagcttgcaagttgtggtttcgtaaagttgagtc--------aagtccaacttaaattttatcatagaatgcaaaatgtaa |
260 |
Q |
| |
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|||||||| | |||||||||| || ||||||||||||| |||||||||||| ||| |||||||||||||| |||||||||||||||||| |
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| T |
48047825 |
taagtggtgaccaatctctaacattccaagttgtggttttgtaaagttgagtacttgagttaagctcaacttaaattttaagatagaatgcaaaatgtaa |
48047924 |
T |
|
| Q |
261 |
cttactt |
267 |
Q |
| |
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||||||| |
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|
| T |
48047925 |
cttactt |
48047931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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