View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9291_low_40 (Length: 207)

Name: NF9291_low_40
Description: NF9291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9291_low_40
NF9291_low_40
[»] chr6 (7 HSPs)
chr6 (41-190)||(14846285-14846434)
chr6 (86-129)||(3913840-3913883)
chr6 (86-127)||(9721777-9721818)
chr6 (86-129)||(9719659-9719702)
chr6 (86-129)||(9723646-9723689)
chr6 (86-129)||(12170275-12170318)
chr6 (86-129)||(33053435-33053478)
[»] chr4 (8 HSPs)
chr4 (73-129)||(13633913-13633970)
chr4 (86-129)||(2520576-2520619)
chr4 (86-129)||(10496141-10496184)
chr4 (86-129)||(19853778-19853821)
chr4 (86-129)||(26633937-26633980)
chr4 (86-128)||(9165310-9165352)
chr4 (86-126)||(29961196-29961236)
chr4 (85-129)||(53810827-53810871)
[»] chr8 (8 HSPs)
chr8 (86-129)||(27110729-27110772)
chr8 (86-129)||(31013836-31013879)
chr8 (86-129)||(45446076-45446119)
chr8 (64-129)||(17693855-17693921)
chr8 (86-129)||(8412614-8412657)
chr8 (86-129)||(10377478-10377521)
chr8 (86-129)||(25191331-25191374)
chr8 (64-127)||(1236935-1236999)
[»] chr5 (7 HSPs)
chr5 (86-129)||(25979936-25979979)
chr5 (86-129)||(38597576-38597619)
chr5 (86-129)||(7036006-7036049)
chr5 (86-129)||(7929977-7930020)
chr5 (86-129)||(11977204-11977247)
chr5 (64-129)||(6012382-6012448)
chr5 (96-129)||(24230064-24230097)
[»] chr3 (15 HSPs)
chr3 (86-129)||(45568711-45568754)
chr3 (86-129)||(47895930-47895973)
chr3 (86-127)||(40487106-40487147)
chr3 (70-129)||(38545614-38545674)
chr3 (86-129)||(9998245-9998288)
chr3 (86-129)||(10108017-10108060)
chr3 (86-129)||(10232849-10232892)
chr3 (86-129)||(21431404-21431447)
chr3 (86-129)||(35865200-35865243)
chr3 (86-129)||(48651002-48651045)
chr3 (86-128)||(33579648-33579690)
chr3 (73-129)||(43016634-43016691)
chr3 (89-125)||(9797797-9797833)
chr3 (89-129)||(36910925-36910965)
chr3 (64-127)||(53808106-53808170)
[»] chr2 (10 HSPs)
chr2 (86-129)||(12677563-12677606)
chr2 (86-127)||(31788247-31788288)
chr2 (86-129)||(1421460-1421503)
chr2 (86-129)||(7448037-7448080)
chr2 (86-129)||(7646261-7646304)
chr2 (86-129)||(11985497-11985540)
chr2 (86-129)||(35220120-35220163)
chr2 (86-129)||(43397386-43397429)
chr2 (86-127)||(9169524-9169565)
chr2 (86-122)||(7678145-7678181)
[»] chr1 (4 HSPs)
chr1 (86-129)||(35484645-35484688)
chr1 (64-129)||(34878515-34878581)
chr1 (87-129)||(26535182-26535224)
chr1 (86-122)||(31983969-31984005)
[»] chr7 (4 HSPs)
chr7 (86-130)||(42978388-42978432)
chr7 (64-129)||(37837702-37837768)
chr7 (89-129)||(40992963-40993003)
chr7 (89-129)||(45350462-45350502)
[»] scaffold0127 (1 HSPs)
scaffold0127 (86-129)||(15271-15314)
[»] scaffold0017 (1 HSPs)
scaffold0017 (86-129)||(33015-33058)
[»] scaffold0088 (1 HSPs)
scaffold0088 (64-129)||(50565-50631)
[»] scaffold0219 (1 HSPs)
scaffold0219 (86-126)||(15105-15145)


Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 41 - 190
Target Start/End: Original strand, 14846285 - 14846434
Alignment:
Q  41 atatagaggagtgattctaggttccctcatcaatgagcgaaagagaagaaagttaagagagaagttggagtttcactcactagaaaactccaacttccaa 140  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14846285 atatagaggagtgactctaggttccctcatcaatgaacgaaagagaagaaagttaagagagaagttggagtttcactcactagaaaactccaacttccaa 14846384  T
Q  141 gaagagtattgaaatgcataaattttgataacaaattaacagtcgtacct 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14846385 gaagagtattgaaatgcataaattttgataacaaattaacagtcgtacct 14846434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 3913840 - 3913883
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||    
T  3913840 aagaaagtttagagagaagttggagtttctctcactagaaaact 3913883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 9721777 - 9721818
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaa 127  Q
    ||||||||| ||||||||||||||||||| ||||||||||||    
T  9721777 aagaaagtttagagagaagttggagtttctctcactagaaaa 9721818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 9719659 - 9719702
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||||||||||| ||||| ||||||||    
T  9719659 aagaaagtttagagagaagttggagtttctctcacaagaaaact 9719702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 9723646 - 9723689
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| |||||||||||||||||||  |||||||||||||    
T  9723646 aagaaagtttagagagaagttggagtttctttcactagaaaact 9723689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 12170318 - 12170275
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||    
T  12170318 aagaaagtctagagagaagttggagtttctctcactagaaaact 12170275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 33053435 - 33053478
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||||||||||| | ||||||||||||    
T  33053435 aagaaagtttagagagaagttggagtttctcccactagaaaact 33053478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 13633970 - 13633913
Alignment:
Q  73 atgagcgaaagagaa-gaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||| ||||||| ||||||||||||||||||| ||||||||||||||    
T  13633970 atgagcgaaggagaaagaaagtttagagagaagttggagtttctctcactagaaaact 13633913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 2520619 - 2520576
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||    
T  2520619 aagaaagtttagagagaagttggagtttctctcactagaaaact 2520576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 10496184 - 10496141
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||| ||||||||||||||| ||||||||||||||    
T  10496184 aagaaagtttagaaagaagttggagtttctctcactagaaaact 10496141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 19853778 - 19853821
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||||||||||| | ||||||||||||    
T  19853778 aagaaagtttagagagaagttggagtttctcccactagaaaact 19853821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 26633937 - 26633980
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||||    
T  26633937 aagaaagtttagagagaagttggagtttctctcactaaaaaact 26633980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 9165310 - 9165352
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaac 128  Q
    ||||||||| ||||||||||||||||||| ||||| |||||||    
T  9165310 aagaaagtttagagagaagttggagtttctctcacaagaaaac 9165352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 29961196 - 29961236
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaa 126  Q
    ||||||||| ||||||||||||||||||| |||| ||||||    
T  29961196 aagaaagtttagagagaagttggagtttctctcattagaaa 29961236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 53810871 - 53810827
Alignment:
Q  85 gaagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    |||||||||| ||||||||| ||||||||| | ||||||||||||    
T  53810871 gaagaaagtttagagagaagctggagtttctcccactagaaaact 53810827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 27110729 - 27110772
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||    
T  27110729 aagaaagtttagagagaagttggagtttctctcactagaaaact 27110772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 31013836 - 31013879
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||    
T  31013836 aagaaagtttagagagaagttggagtttctctcactagaaaact 31013879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 45446076 - 45446119
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||    
T  45446076 aagaaagtttagagagaagttggagtttctctcactagaaaact 45446119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 17693855 - 17693921
Alignment:
Q  64 ccctcatcaatgagcgaaagagaa-gaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||| ||||||| |||| ||||| ||||||| ||||||||||||||||||| ||||||| ||||||    
T  17693855 ccctcctcaatgaacgaaggagaaagaaagtttagagagaagttggagtttctctcactaaaaaact 17693921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 8412614 - 8412657
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||    
T  8412614 aagaaagtttagagagaagttagagtttctctcactagaaaact 8412657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 10377521 - 10377478
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||||||||||| | ||||||||||||    
T  10377521 aagaaagtttagagagaagttggagtttctcccactagaaaact 10377478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 25191331 - 25191374
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||||    
T  25191331 aagaaagtttagagagaagttggagtttctctcactaaaaaact 25191374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 1236935 - 1236999
Alignment:
Q  64 ccctcatcaatgagcgaaagagaa-gaaagttaagagagaagttggagtttcactcactagaaaa 127  Q
    ||||| |||||||||||||||||| ||||  | |||||||||||| |||||| ||||||| ||||    
T  1236935 ccctcctcaatgagcgaaagagaaggaaaacttagagagaagttgaagtttctctcactaaaaaa 1236999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 25979979 - 25979936
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||    
T  25979979 aagaaagtttagagagaagttggagtttcgctcactagaaaact 25979936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 38597619 - 38597576
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||    
T  38597619 aagaaagtttagagagaagttggagtttctctcactagaaaact 38597576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 7036049 - 7036006
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||    
T  7036049 aagaaagtttagagagaagtttgagtttctctcactagaaaact 7036006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 7930020 - 7929977
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| |||||||| |||||||||| ||||||||||||||    
T  7930020 aagaaagtttagagagaatttggagtttctctcactagaaaact 7929977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 11977204 - 11977247
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||    
T  11977204 aagaaagtttagagagaagttagagtttctctcactagaaaact 11977247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 6012382 - 6012448
Alignment:
Q  64 ccctcatcaatgagcgaaagagaa-gaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||| ||||||| |||| ||||| ||||||| ||||||||||||||||||| | ||||| ||||||    
T  6012382 ccctcctcaatgaacgaaggagaaagaaagtttagagagaagttggagtttctcccactaaaaaact 6012448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 24230064 - 24230097
Alignment:
Q  96 agagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||||||||||||| ||||||||||||||    
T  24230064 agagagaagttggagtttctctcactagaaaact 24230097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 45568711 - 45568754
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||    
T  45568711 aagaaagtttagagagaagttggagtttctctcactagaaaact 45568754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 47895973 - 47895930
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||    
T  47895973 aagaaagtttagagagaagttggagtttctctcactagaaaact 47895930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 40487147 - 40487106
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaa 127  Q
    ||||||||| ||||||||||||||||||| ||||||||||||    
T  40487147 aagaaagtttagagagaagttggagtttctctcactagaaaa 40487106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 38545674 - 38545614
Alignment:
Q  70 tcaatgagcgaaagagaa-gaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||| |||| ||||| ||||||| |||||||||||| |||||| ||||||||||||||    
T  38545674 tcaatgaacgaaggagaaagaaagtttagagagaagttgaagtttctctcactagaaaact 38545614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 9998288 - 9998245
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||||||||||| | ||||||||||||    
T  9998288 aagaaagtttagagagaagttggagtttctcccactagaaaact 9998245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 10108060 - 10108017
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||||||||||| | ||||||||||||    
T  10108060 aagaaagtttagagagaagttggagtttctcccactagaaaact 10108017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 10232892 - 10232849
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||||||||||| | ||||||||||||    
T  10232892 aagaaagtttagagagaagttggagtttctcccactagaaaact 10232849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 21431447 - 21431404
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||||||||||| | ||||||||||||    
T  21431447 aagaaagtttagagagaagttggagtttctcccactagaaaact 21431404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 35865200 - 35865243
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| |||||||||||| |||||| ||||||||||||||    
T  35865200 aagaaagtttagagagaagttgaagtttctctcactagaaaact 35865243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 48651002 - 48651045
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| |||||||||||||||||||  |||||||||||||    
T  48651002 aagaaagtttagagagaagttggagtttctttcactagaaaact 48651045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 33579690 - 33579648
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaac 128  Q
    ||||||||| |||||||||||| |||||| |||||||||||||    
T  33579690 aagaaagtttagagagaagttgaagtttctctcactagaaaac 33579648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 43016691 - 43016634
Alignment:
Q  73 atgagcgaaagagaa-gaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    |||| |||||||||| |||| || ||||||||||| ||||||| ||||||||||||||    
T  43016691 atgaacgaaagagaaagaaaatttagagagaagttagagtttctctcactagaaaact 43016634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 9797797 - 9797833
Alignment:
Q  89 aaagttaagagagaagttggagtttcactcactagaa 125  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  9797797 aaagtttagagagaagttggagtttctctcactagaa 9797833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 36910925 - 36910965
Alignment:
Q  89 aaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    |||||| | ||||||||||||||||| ||||||||||||||    
T  36910925 aaagtttatagagaagttggagtttctctcactagaaaact 36910965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 53808106 - 53808170
Alignment:
Q  64 ccctcatcaatgagcgaaagagaag-aaagttaagagagaagttggagtttcactcactagaaaa 127  Q
    ||||| || |||||||||||||||| |||  | ||||||||||||||||||| ||||||| ||||    
T  53808106 ccctcctcgatgagcgaaagagaaggaaaacttagagagaagttggagtttctctcactaaaaaa 53808170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 12677563 - 12677606
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||    
T  12677563 aagaaagtttagagagaagttggagtttctctcactagaaaact 12677606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 31788288 - 31788247
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaa 127  Q
    ||||||||| ||||||||||||||||||| ||||||||||||    
T  31788288 aagaaagtttagagagaagttggagtttctctcactagaaaa 31788247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 1421503 - 1421460
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| || |||||||||||||||| ||||||||||||||    
T  1421503 aagaaagtttagcgagaagttggagtttctctcactagaaaact 1421460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 7448080 - 7448037
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||||||||||| | ||||||||||||    
T  7448080 aagaaagtttagagagaagttggagtttctcccactagaaaact 7448037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 7646304 - 7646261
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||||||||||| | ||||||||||||    
T  7646304 aagaaagtttagagagaagttggagtttctcccactagaaaact 7646261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 11985497 - 11985540
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||||||||||| |||| |||||||||    
T  11985497 aagaaagtttagagagaagttggagtttctctcattagaaaact 11985540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 35220163 - 35220120
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||    
T  35220163 aagaaagtttagagagaggttggagtttctctcactagaaaact 35220120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 43397386 - 43397429
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| | ||||||||||||||||| ||||||||||||||    
T  43397386 aagaaagtttaaagagaagttggagtttctctcactagaaaact 43397429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 9169524 - 9169565
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaa 127  Q
    ||||||||| ||||||||||||||||||| | ||||||||||    
T  9169524 aagaaagtttagagagaagttggagtttctcccactagaaaa 9169565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 7678145 - 7678181
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcacta 122  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  7678145 aagaaagtttagagagaagttggagtttctctcacta 7678181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 35484645 - 35484688
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||    
T  35484645 aagaaagtttagagagaagttggagtttctctcactagaaaact 35484688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 34878515 - 34878581
Alignment:
Q  64 ccctcatcaatgagcgaaagagaa-gaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||| || |||| |||||||||| ||||||| | ||||||||||||||||| ||||||||||||||    
T  34878515 ccctcctcgatgaacgaaagagaaagaaagtttaaagagaagttggagtttctctcactagaaaact 34878581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 26535224 - 26535182
Alignment:
Q  87 agaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||    
T  26535224 agaaagtttagagagaagttagagtttctctcactagaaaact 26535182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 31984005 - 31983969
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcacta 122  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  31984005 aagaaagtttagagagaagttggagtttctctcacta 31983969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 42978432 - 42978388
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaactc 130  Q
    ||||||||| ||||||||||| ||||||| |||||||||||||||    
T  42978432 aagaaagtttagagagaagttagagtttctctcactagaaaactc 42978388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 37837702 - 37837768
Alignment:
Q  64 ccctcatcaatgagcgaaagagaag-aaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||| ||||||| |||| |||||  |||||| ||||||||||||||||||| |||| |||||||||    
T  37837702 ccctcctcaatgaacgaaggagaaataaagtttagagagaagttggagtttctctcattagaaaact 37837768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 40993003 - 40992963
Alignment:
Q  89 aaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    |||||| ||||||||||||||||||| | ||||||||||||    
T  40993003 aaagtttagagagaagttggagtttctcccactagaaaact 40992963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 45350462 - 45350502
Alignment:
Q  89 aaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    |||||| |||||||||||| |||||| ||||||||||||||    
T  45350462 aaagtttagagagaagttgaagtttctctcactagaaaact 45350502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 15314 - 15271
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| |||||||||||| |||||| ||||||||||||||    
T  15314 aagaaagtttagagagaagttgaagtttctctcactagaaaact 15271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 33015 - 33058
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||    
T  33015 aagaaagtttagagagaagttagagtttctctcactagaaaact 33058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 50631 - 50565
Alignment:
Q  64 ccctcatcaatgagcgaaagagaa-gaaagttaagagagaagttggagtttcactcactagaaaact 129  Q
    ||||| ||||||| |||| ||||| ||||||| ||| ||||||||||||||| | ||||||||||||    
T  50631 ccctcctcaatgaacgaaggagaaagaaagtttagaaagaagttggagtttctcccactagaaaact 50565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 15105 - 15145
Alignment:
Q  86 aagaaagttaagagagaagttggagtttcactcactagaaa 126  Q
    ||||||||| |||||||| |||||||||| |||||||||||    
T  15105 aagaaagtttagagagaaattggagtttctctcactagaaa 15145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University