View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9291_low_6 (Length: 407)
Name: NF9291_low_6
Description: NF9291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9291_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 4976809 - 4976574
Alignment:
| Q |
20 |
taactcatattcaagagtaagatatgttgctgtcatgcttgcacttgtaagagtcacaagctgacgtctaaaacgatttcccaagaaattgatgtggcat |
119 |
Q |
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| T |
4976809 |
taactcatattcaagagtaagatatgttgctgtcatgcttgcacttgtaagagtcacaagctgacgtctaaaactatttcccaagaaattgatgtggcat |
4976710 |
T |
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| Q |
120 |
gtgaagccattaagtttttaatcaagtgtatgtttggtaattataattgtatgcccgaaacacgatggcccactttgattttagtagatcgctgtaattt |
219 |
Q |
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| T |
4976709 |
gtgaagccattaagtttttaatc-------tgtttggtaattata-------gtcagaatcacgatggtccactttaattttagtagatcgctgtaattt |
4976624 |
T |
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| Q |
220 |
taacatattca-cccgatactaa--atatgataagtgttttgaaaaaaca |
266 |
Q |
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| T |
4976623 |
taacatactcatcgcgatatcaaatatatgataagtgttttgaaaaaaca |
4976574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 4994716 - 4994481
Alignment:
| Q |
20 |
taactcatattcaagagtaagatatgttgctgtcatgcttgcacttgtaagagtcacaagctgacgtctaaaacgatttcccaagaaattgatgtggcat |
119 |
Q |
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| T |
4994716 |
taactcatattcaagagtaagatatgttgctgtcatgcttgcacttgtaagagtcacaagctgacgtctaaaactatttcccaagaaattgatgtggcat |
4994617 |
T |
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| Q |
120 |
gtgaagccattaagtttttaatcaagtgtatgtttggtaattataattgtatgcccgaaacacgatggcccactttgattttagtagatcgctgtaattt |
219 |
Q |
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| T |
4994616 |
gtgaagccattaagtttttaatc-------tgtttggtaattata-------gtcagaatcacgatggtccactttaattttagtagatcgctgtaattt |
4994531 |
T |
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| Q |
220 |
taacatattca-cccgatactaa--atatgataagtgttttgaaaaaaca |
266 |
Q |
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| T |
4994530 |
taacatactcatcgcgatatcaaatatatgataagtgttttgaaaaaaca |
4994481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 278 - 387
Target Start/End: Complemental strand, 4975695 - 4975586
Alignment:
| Q |
278 |
gtagatgaaagagcaaacactatttaaaaacttgcgcacataaaagggagattttgagtttgaactcggttaactaaaatgttcagttaacaatttcggt |
377 |
Q |
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||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
4975695 |
gtagatgaaaggacaaacactacttaaaaacttgcacacataaaagggagattttgagtttgaactcgattaactaaaatgttcagtttacaatttcggt |
4975596 |
T |
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| Q |
378 |
attatcaatt |
387 |
Q |
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|||||||||| |
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| T |
4975595 |
attatcaatt |
4975586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 278 - 387
Target Start/End: Complemental strand, 4993603 - 4993494
Alignment:
| Q |
278 |
gtagatgaaagagcaaacactatttaaaaacttgcgcacataaaagggagattttgagtttgaactcggttaactaaaatgttcagttaacaatttcggt |
377 |
Q |
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||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
4993603 |
gtagatgaaaggacaaacactacttaaaaacttgcacacataaaagggagattttgagtttgaactcgattaactaaaatgttcagtttacaatttcggt |
4993504 |
T |
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| Q |
378 |
attatcaatt |
387 |
Q |
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|||||||||| |
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| T |
4993503 |
attatcaatt |
4993494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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