View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9291_low_8 (Length: 403)
Name: NF9291_low_8
Description: NF9291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9291_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 9 - 395
Target Start/End: Complemental strand, 4975549 - 4975164
Alignment:
| Q |
9 |
gaatattgcataaaaatgttatttgaaaaatgtatgtaccttcccttagtttagttatttattcatcctgctcaacaataattgtattgtcttgatctta |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4975549 |
gaatatagcataaaaatgttatttgaaaaatgtatgtaccttcccttagtttagttatttattcatcctgctcaacaataattgtattgtcttgatctta |
4975450 |
T |
|
| Q |
109 |
ctctacctcctcagcatcagaatagatgtcttctaacttatgaataaatgtttgatataacttccttaaataaaatattaagcaagcagttgataaatca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4975449 |
ctctacctcctcagcatcagaatagatgtcttctaacttatgaataaatgtttgatataacttccttaaataaaatattaagcaagcagttgataaatca |
4975350 |
T |
|
| Q |
209 |
ttaaacccataatctactctttcaacccttcggttattctctcttccttttagcattttcttcaataatgcatagttttcaattgtgagattattttttg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4975349 |
ttaaacccataatctactctttcaacccttcggttattctctcttccttttagtattttcttcaataatgcatagttttcaattgtgagattattttttg |
4975250 |
T |
|
| Q |
309 |
ttagtaacttagtattactcaagaaatattactatattgatttcttttttaaacaacaaattttatttaaccatcaggtctctgctc |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4975249 |
ttagtaacttagtattactcaagaaatattactatattgattt-ttttttaaacaacaaattttatttaaccatcaggtctctgctc |
4975164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 9 - 395
Target Start/End: Complemental strand, 4993457 - 4993072
Alignment:
| Q |
9 |
gaatattgcataaaaatgttatttgaaaaatgtatgtaccttcccttagtttagttatttattcatcctgctcaacaataattgtattgtcttgatctta |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4993457 |
gaatatagcataaaaatgttatttgaaaaatgtatgtaccttcccttagtttagttatttattcatcctgctcaacaataattgtattgtcttgatctta |
4993358 |
T |
|
| Q |
109 |
ctctacctcctcagcatcagaatagatgtcttctaacttatgaataaatgtttgatataacttccttaaataaaatattaagcaagcagttgataaatca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4993357 |
ctctacctcctcagcatcagaatagatgtcttctaacttatgaataaatgtttgatataacttccttaaataaaatattaagcaagcagttgataaatca |
4993258 |
T |
|
| Q |
209 |
ttaaacccataatctactctttcaacccttcggttattctctcttccttttagcattttcttcaataatgcatagttttcaattgtgagattattttttg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4993257 |
ttaaacccataatctactctttcaacccttcggttattctctcttccttttagtattttcttcaataatgcatagttttcaattgtgagattattttttg |
4993158 |
T |
|
| Q |
309 |
ttagtaacttagtattactcaagaaatattactatattgatttcttttttaaacaacaaattttatttaaccatcaggtctctgctc |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4993157 |
ttagtaacttagtattactcaagaaatattactatattgattt-ttttttaaacaacaaattttatttaaccatcaggtctctgctc |
4993072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 353 - 395
Target Start/End: Original strand, 43312275 - 43312317
Alignment:
| Q |
353 |
ttttttaaacaacaaattttatttaaccatcaggtctctgctc |
395 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
43312275 |
ttttttaaacaacaaattttatttaaccacctggtctctgctc |
43312317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 388
Target Start/End: Original strand, 10248185 - 10248220
Alignment:
| Q |
353 |
ttttttaaacaacaaattttatttaaccatcaggtc |
388 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10248185 |
tttttgaaacaacaaattttatttaaccatcaggtc |
10248220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University