View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9292_low_16 (Length: 213)
Name: NF9292_low_16
Description: NF9292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9292_low_16 |
 | |
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| [»] scaffold0002 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 53573223 - 53573423
Alignment:
| Q |
1 |
ctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataactctttaataactaatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
53573223 |
ctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataacacttaaataactaatcaa |
53573322 |
T |
|
| Q |
101 |
aaatagcagctaat--nnnnnnnnnctcatgtcaacactgaatttgtatcataagttcttcaacatcttgatacaactatgagcctcaattcaagtctct |
198 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||| |
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|
| T |
53573323 |
aaatagcagctaataaaaaaaaaaactcatgtcaacactgaatttgtatcataagctcttcaacatctcgatacaactatgggcctcaattcaagtctct |
53573422 |
T |
|
| Q |
199 |
g |
199 |
Q |
| |
|
| |
|
|
| T |
53573423 |
g |
53573423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 52053612 - 52053813
Alignment:
| Q |
1 |
ctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataactctttaataactaatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
52053612 |
ctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataacacttaaataactaatcaa |
52053711 |
T |
|
| Q |
101 |
aaatagcagctaat---nnnnnnnnnctcatgtcaacactgaatttgtatcataagttcttcaacatcttgatacaactatgagcctcaattcaagtctc |
197 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||| |
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|
| T |
52053712 |
aaatagcagctaataaaaaaaaaaaactcatgtcaacactgaatttgtatcataagctcttcaacatctcgatacaactatgggcctcaattcaagtctc |
52053811 |
T |
|
| Q |
198 |
tg |
199 |
Q |
| |
|
|| |
|
|
| T |
52053812 |
tg |
52053813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 30198368 - 30198568
Alignment:
| Q |
1 |
ctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataactctttaataactaatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
30198368 |
ctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataacacttaaataactaatcaa |
30198467 |
T |
|
| Q |
101 |
aaatagcagctaat--nnnnnnnnnctcatgtcaacactgaatttgtatcataagttcttcaacatcttgatacaactatgagcctcaattcaagtctct |
198 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
30198468 |
aaatagcagctaataaaaaaaaaaactcatgtcaacactgaatttgtatcataagctcttcaacatctcgatacaactatgggcctcaattcaagtctct |
30198567 |
T |
|
| Q |
199 |
g |
199 |
Q |
| |
|
| |
|
|
| T |
30198568 |
g |
30198568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 464203 - 464404
Alignment:
| Q |
1 |
ctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataactctttaataactaatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
464203 |
ctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataacacttaaataactaatcaa |
464302 |
T |
|
| Q |
101 |
aaatagcagctaat---nnnnnnnnnctcatgtcaacactgaatttgtatcataagttcttcaacatcttgatacaactatgagcctcaattcaagtctc |
197 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
464303 |
aaatagcagctaataaaaaaaaaaaactcatgtcaacactgaatttgtatcataagctcttcaacatctcgatacaactatgggcctcaattcaagtctc |
464402 |
T |
|
| Q |
198 |
tg |
199 |
Q |
| |
|
|| |
|
|
| T |
464403 |
tg |
464404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 35898717 - 35898516
Alignment:
| Q |
1 |
ctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataactctttaataactaatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
35898717 |
ctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataacacttaaataactaatcaa |
35898618 |
T |
|
| Q |
101 |
aaatagcagctaat---nnnnnnnnnctcatgtcaacactgaatttgtatcataagttcttcaacatcttgatacaactatgagcctcaattcaagtctc |
197 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
35898617 |
aaatagcagctaataaaaaaaaaaaactcatgtcaacactgaatttgtatcataagctcttcaacatctcgatacaactatgggcctcaattcaagtctc |
35898518 |
T |
|
| Q |
198 |
tg |
199 |
Q |
| |
|
|| |
|
|
| T |
35898517 |
tg |
35898516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 31356256 - 31356055
Alignment:
| Q |
1 |
ctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataactctttaataactaatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
31356256 |
ctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataacacttaaataactaatcaa |
31356157 |
T |
|
| Q |
101 |
aaatagcagctaat---nnnnnnnnnctcatgtcaacactgaatttgtatcataagttcttcaacatcttgatacaactatgagcctcaattcaagtctc |
197 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
31356156 |
aaatagcagctaataaaaaaaaaaaactcatgtcaacactgaatttgtatcataagctcttcaacatctcgatacaactatgggcctcaattcaagtctc |
31356057 |
T |
|
| Q |
198 |
tg |
199 |
Q |
| |
|
|| |
|
|
| T |
31356056 |
tg |
31356055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 16993546 - 16993344
Alignment:
| Q |
1 |
ctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataactctttaataactaatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
16993546 |
ctaatcaaacaacaaagaaatagtacaataattgtaaaaggggcttatgtaaagcaacacctaattaaaaattcatgataacacttaaataactaatcaa |
16993447 |
T |
|
| Q |
101 |
aaatagcagctaat-------nnnnnnnnnctcatgtcaacactgaatttgtatcataagttcttcaacatcttgatacaactatgagcctcaattcaag |
193 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
16993446 |
aaatagcagctaataaaaaaaaaaaaaaaactcatgtcaacactgaatttgtatcataagctcttcaacatctcgatacaactatgggcctcaattcaag |
16993347 |
T |
|
| Q |
194 |
tct |
196 |
Q |
| |
|
||| |
|
|
| T |
16993346 |
tct |
16993344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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