View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9292_low_2 (Length: 449)
Name: NF9292_low_2
Description: NF9292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9292_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 53074304 - 53073876
Alignment:
| Q |
18 |
atattgagtggcaaggcttggaacaatctcctagacaacaaggtattgattgattgattcattcatt----aacctactctttttgtgtttctcaaaata |
113 |
Q |
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| T |
53074304 |
atattgagtggcaaggcttggaacaatctcctagacaacaaggtattgattgattgattcattcattcattaacctactctttttgtgtttctcaaaata |
53074205 |
T |
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| Q |
114 |
gtgaatgaagatattcatgaatcggttgttttataatacgtgacagactgcattcaccaccaagaaagactatggaaaagaggagagggaagctcaatgg |
213 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53074204 |
gtgaatgaagatattcatgaattggttgttttataatacgtgacagactgcattcaccaccaagaaagactatggaaaagaggagagggaagctcaatgg |
53074105 |
T |
|
| Q |
214 |
gcacatgctcagaggactctacatggacttcaaccaccagaaagttctggtattttcaatgagaagagcagttacagagaactgtccgagattgctgagc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53074104 |
gcacatgctcagaggactctacatggacttcaaccaccagaaagttctggtattttcaatgagaagagcagttacagagaactgtccgagattgctgagc |
53074005 |
T |
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| Q |
314 |
aagcgaagagaagagctgaagttgcaaggtaagcagccatgcctgccattcacttctgagattacaaatatatgtataatcatcatcattactatctata |
413 |
Q |
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| T |
53074004 |
aagcgaagagaagagctgaagttgcaaggtaagcagccatgcctgccattcacttctgagattacaaatatatgtataatcatcatcattactatctata |
53073905 |
T |
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| Q |
414 |
caaagattaattccgttccatctctgctt |
442 |
Q |
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| T |
53073904 |
caaagattaattccgtttcatctatgctt |
53073876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 48435246 - 48435189
Alignment:
| Q |
158 |
agactgcattcaccaccaagaaagactatggaaaagaggagagggaagctcaatgggc |
215 |
Q |
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| T |
48435246 |
agactgcattcacaacaaagaaggactatggaagaggagagagggaggctcaatgggc |
48435189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 181 - 348
Target Start/End: Original strand, 15870839 - 15871009
Alignment:
| Q |
181 |
gactatggaaaagaggagagggaagctcaatgggcacatgctcagaggactctacatggacttcaaccacc---agaaagttctggtattttcaatgaga |
277 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| | |||| ||||| |||| || | |||||||| | |
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| T |
15870839 |
gactacggaaaagaggagagggaagctcaatgggcacatgctcaaaggacccttcatggactttcagcaccagaagaaacttctagtctcttcaatgaca |
15870938 |
T |
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| Q |
278 |
agagcagttacagagaactgtccgagattgctgagcaagcgaagagaagagctgaagttgcaaggtaagca |
348 |
Q |
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| T |
15870939 |
agaacacttatagagaattgtctgagattgctgagcaggctaagcgacgcgctgaagttgctaggtaagca |
15871009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 21979493 - 21979435
Alignment:
| Q |
157 |
cagactgcattcaccaccaagaaagactatggaaaagaggagagggaagctcaatgggc |
215 |
Q |
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| T |
21979493 |
cagactgcattcacaacaaagaaagactacggtaaaggagagagggaggctcaatgggc |
21979435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 156 - 346
Target Start/End: Original strand, 50277991 - 50278181
Alignment:
| Q |
156 |
acagactgcattcaccaccaagaaagactatggaaaagaggagagggaagctcaatgggcacatgctcagaggactctacatggacttcaaccaccagaa |
255 |
Q |
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| T |
50277991 |
acagactgccttcacaacaaagaaagactatggcaaagaagagagagaagctcagtgggcaactgctcagaggactcttcatggtcttcagtcacctgac |
50278090 |
T |
|
| Q |
256 |
agttctggtattttcaatgagaagagcagttacagagaactgtccgagattgctgagcaagcgaagagaagagctgaagttgcaaggtaag |
346 |
Q |
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| | |||||||||| |||| || ||||| || || || ||||||||||||||||| |||||| | |||||||||||| |||||| |
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| T |
50278091 |
acaaccaaccttttcaatgacaagaatagctacagggagctttctgagattgctgagcaagccaagagacgcgctgaagttgcacggtaag |
50278181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 156 - 342
Target Start/End: Complemental strand, 1495455 - 1495269
Alignment:
| Q |
156 |
acagactgcattcaccaccaagaaagactatggaaaagaggagagggaagctcaatgggcacatgctcagaggactctacatggacttcaaccaccagaa |
255 |
Q |
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||||||||| ||||| || |||||||||||||||||||| ||||||||||| |||||||| ||| ||||| || || || || ||||| || || ||| |
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| T |
1495455 |
acagactgccttcactacaaagaaagactatggaaaagaagagagggaagcacaatgggcggctgcgcagagaacacttcacggtcttcagcctccggaa |
1495356 |
T |
|
| Q |
256 |
agttctggtattttcaatgagaagagcagttacagagaactgtccgagattgctgagcaagcgaagagaagagctgaagttgcaagg |
342 |
Q |
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|| |||||||||| |||| || || |||||||| || |||||||| |||||||| |||||| | ||||||||||||||| |
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| T |
1495355 |
gcctccaacgttttcaatgaaaagaatagctatagagaactttcggagattgcggagcaagccaagagacgtgctgaagttgcaagg |
1495269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 1490595 - 1490538
Alignment:
| Q |
156 |
acagactgcattcaccaccaagaaagactatggaaaagaggagagggaagctcaatgg |
213 |
Q |
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||||||| ||||||| | ||||||||||||||| ||||| ||||| ||||| |||||| |
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| T |
1490595 |
acagactacattcactaacaagaaagactatggtaaagaagagagagaagcacaatgg |
1490538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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