View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9292_low_5 (Length: 322)

Name: NF9292_low_5
Description: NF9292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9292_low_5
NF9292_low_5
[»] chr3 (12 HSPs)
chr3 (1-320)||(23017126-23017445)
chr3 (1-313)||(23039105-23039417)
chr3 (1-317)||(23140110-23140426)
chr3 (1-317)||(23145984-23146300)
chr3 (1-317)||(23148822-23149138)
chr3 (19-317)||(23032781-23033079)
chr3 (1-317)||(23036234-23036550)
chr3 (1-317)||(23024336-23024652)
chr3 (9-120)||(22946476-22946587)
chr3 (9-120)||(22972023-22972134)
chr3 (39-144)||(22831937-22832042)
chr3 (39-144)||(22941367-22941472)
[»] chr6 (1 HSPs)
chr6 (1-317)||(21779877-21780193)
[»] scaffold0554 (1 HSPs)
scaffold0554 (1-317)||(6374-6690)
[»] chr1 (3 HSPs)
chr1 (1-277)||(12609969-12610245)
chr1 (1-208)||(15885691-15885898)
chr1 (1-133)||(12637065-12637197)
[»] scaffold0059 (2 HSPs)
scaffold0059 (1-147)||(62217-62363)
scaffold0059 (252-288)||(62468-62504)
[»] chr8 (1 HSPs)
chr8 (39-144)||(5594023-5594128)


Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 23017126 - 23017445
Alignment:
Q  1 atctctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23017126 atctctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttagtcttaactggtatgtgata 23017225  T
Q  101 accatgtatctcacatgctttaccacattctcttggtagcaaaagaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23017226 accatgtatctcacatgctttaccacattctcttggtagcaaaagaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactg 23017325  T
Q  201 agttcattgatgcatttttcatcaacccgttctttcatttttaaaacctccctcacttcatcttgtgctttcttcattattcttggattccttatcattt 300  Q
    |||||||| ||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23017326 agttcatttatgcatttttcatcaacccgtcctttcatttttataacatccctcacttcatcttgtgctttcttcattattcttggattccttatcattt 23017425  T
Q  301 ctatcattgcccaatctgtg 320  Q
    ||||||||||||||||||||    
T  23017426 ctatcattgcccaatctgtg 23017445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 23039105 - 23039417
Alignment:
Q  1 atctctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgata 100  Q
    ||||||||||||||||  |||| || ||||||||||| |||||||||||||| |||||||||||||| | |||||||||  ||||||  |||||||||||    
T  23039105 atctctctggataaaatctctccggctcagtccagtaatttggatctcttgcaattgcccaagcattgactatcaccttactcttaataggtatgtgata 23039204  T
Q  101 accatgtatctcacatgctttaccacattctcttggtagcaaaagaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactg 200  Q
    ||||| ||||||||||| || || |||||||||||| ||||||||||||  || ||| ||||| || |||||||||||||||||||| |||| |||| ||    
T  23039205 accatttatctcacatgtttgacgacattctcttggcagcaaaagaggtgttggagggtgtaacctcagggtttctttgacaactgacttcaaataattg 23039304  T
Q  201 agttcattgatgcatttttcatcaacccgttctttcatttttaaaacctccctcacttcatcttgtgctttcttcattattcttggattccttatcattt 300  Q
    |||||||||||||| ||||||||||||| | |||||||||| |||||||| ||||| |||||||| |||||||||||||||||||||| |||||||||||    
T  23039305 agttcattgatgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgcgctttcttcattattcttggatcccttatcattt 23039404  T
Q  301 ctatcattgccca 313  Q
    ||| |||||||||    
T  23039405 ctaccattgccca 23039417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 23140110 - 23140426
Alignment:
Q  1 atctctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgata 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| |  | |||||| ||||||| ||||||||||||    
T  23140110 atctctctggataaaatttctctggttcagtccagtagtttggatctctcgcgattgcccatgcattgacgaccaccttagtcttaaatggtatgtgata 23140209  T
Q  101 accatgtatctcacatgctttaccacattctcttggtagcaaaagaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactg 200  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||| || | ||  ||||| || | |||||||||||| | |||||||| ||||  |    
T  23140210 accatgtatctcacatgcttgaccacactctcttggtagcaaaagaggcaccggagtgtgtaacctcaaggtttctttgacgattgatttcaaataatgg 23140309  T
Q  201 agttcattgatgcatttttcatcaacccgttctttcatttttaaaacctccctcacttcatcttgtgctttcttcattattcttggattccttatcattt 300  Q
    || || |||||||| ||||||||||||| | |||||||||| |||||||| ||||| ||||||||  ||||||||||||||||||||| |||||||||||    
T  23140310 agctcgttgatgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgcactttcttcattattcttggatcccttatcattt 23140409  T
Q  301 ctatcattgcccaatct 317  Q
    ||| |||||||||||||    
T  23140410 ctaccattgcccaatct 23140426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 23145984 - 23146300
Alignment:
Q  1 atctctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgata 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||| | || |||||| |||||||  |||||||||||    
T  23145984 atctctctggataaaacctctctggttcagtccagtagtttggatctcttgcaactgcccaagcattgactaacaccttagtcttaatcggtatgtgata 23146083  T
Q  101 accatgtatctcacatgctttaccacattctcttggtagcaaaagaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactg 200  Q
    ||||| ||| |||||| ||| || ||||||||| |||| |||||||||| ||| ||| ||||  || | |||||||||||||||| |||||| |||| ||    
T  23146084 accatttatatcacattcttgactacattctctcggtaacaaaagaggtgctggagggtgtagccttaaggtttctttgacaactaatttcaaataattg 23146183  T
Q  201 agttcattgatgcatttttcatcaacccgttctttcatttttaaaacctccctcacttcatcttgtgctttcttcattattcttggattccttatcattt 300  Q
    |||||||||||||| ||||||||||||| | |||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||| | ||| || ||    
T  23146184 agttcattgatgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgtgctttcttcatgattcttggatcctttaccaatt 23146283  T
Q  301 ctatcattgcccaatct 317  Q
    ||| |||||||||||||    
T  23146284 ctaccattgcccaatct 23146300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 23148822 - 23149138
Alignment:
Q  1 atctctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgata 100  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||| || |||||||  || ||||||||    
T  23148822 atctctctggataaaacctctctggttcagtccagtagtttgaatctcttgcaattgcccaagcattgattatcactttagtcttaatcggaatgtgata 23148921  T
Q  101 accatgtatctcacatgctttaccacattctcttggtagcaaaagaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactg 200  Q
    ||||| ||| ||||| |||| || ||||||||| |||| |||||||||| | | ||| ||||  || | |||||||||||||||| |||||| |||| ||    
T  23148922 accatttatatcacacgcttgactacattctctcggtaacaaaagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattg 23149021  T
Q  201 agttcattgatgcatttttcatcaacccgttctttcatttttaaaacctccctcacttcatcttgtgctttcttcattattcttggattccttatcattt 300  Q
    |||||||||||||| ||||||||||||  | |||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||| | ||| ||| |    
T  23149022 agttcattgatgcaattttcatcaacctttcctttcattttgaaaacctctctcacctcatcttgtgctttcttcattattcttggatcctttaccatct 23149121  T
Q  301 ctatcattgcccaatct 317  Q
    ||| |||||||||||||    
T  23149122 ctaccattgcccaatct 23149138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 23032781 - 23033079
Alignment:
Q  19 tctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgataaccatgtatctcacatgc 118  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||  | |||| ||||||||||||||||| ||||||||||||    
T  23032781 tctctggttcagtccagtagtttggatctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgc 23032880  T
Q  119 tttaccacattctcttggtagcaaaagaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactgagttcattgatgcatttt 218  Q
    || ||| |||||||||||||||||||||||||||| ||| || || ||||||||||||||||| |||||||||| |||| |||| ||   |||| | |||    
T  23032881 ttgaccgcattctcttggtagcaaaagaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataattgagatcggggatgtaattt 23032980  T
Q  219 tcatcaacccgttctttcatttttaaaacctccctcacttcatcttgtgctttcttcattattcttggattccttatcatttctatcattgcccaatct 317  Q
    |||||||||  | |||||||||| |||||||| ||||| ||| ||||||||||||||||||||| | |||  |||||||||||| |||| |||||||||    
T  23032981 tcatcaacctttcctttcattttgaaaacctctctcacctcagcttgtgctttcttcattattcgttgatctcttatcatttctgtcatcgcccaatct 23033079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 23036234 - 23036550
Alignment:
Q  1 atctctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgata 100  Q
    ||||||| ||||||||  ||||||||||||||||||| |||||||||||||| |||||||||||||| ||| | |||||  ||||||  |||||||||||    
T  23036234 atctctcgggataaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgata 23036333  T
Q  101 accatgtatctcacatgctttaccacattctcttggtagcaaaagaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactg 200  Q
    ||||| |||| ||||||||| | |||| |||||||||||||||||||||  || ||| ||||| || |||||||||||||| |||||||||| |||| ||    
T  23036334 accatttatcacacatgcttgaacacactctcttggtagcaaaagaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatg 23036433  T
Q  201 agttcattgatgcatttttcatcaacccgttctttcatttttaaaacctccctcacttcatcttgtgctttcttcattattcttggattccttatcattt 300  Q
    ||||| ||||| || || || || |||| | |||||||||| |||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||||    
T  23036434 agttcgttgatacaattctcttcgacccttcctttcattttgaaaacctctctcacctcagcttgtgctttcttcattattcttggattccttaccattt 23036533  T
Q  301 ctatcattgcccaatct 317  Q
    ||  |||||||||||||    
T  23036534 ctgccattgcccaatct 23036550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 23024336 - 23024652
Alignment:
Q  1 atctctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgata 100  Q
    ||||||||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||| | ||||||||| ||||||  ||| |||| |||    
T  23024336 atctctctggataaaacctctctggttcggtccagtaatttggatctcttgcaattgcccaagcattgactatcaccttagtcttagttggaatgtcata 23024435  T
Q  101 accatgtatctcacatgctttaccacattctcttggtagcaaaagaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactg 200  Q
    ||| | ||||| ||||| || | |||||||||| ||||  ||||| ||| | | ||| ||||| || |||||||||||||||| |||||||| |||| |     
T  23024436 accgtctatcttacatgattgagcacattctctcggtattaaaagtggtgccggagggtgtaacctcagggtttctttgacaattgatttcaaataatta 23024535  T
Q  201 agttcattgatgcatttttcatcaacccgttctttcatttttaaaacctccctcacttcatcttgtgctttcttcattattcttggattccttatcattt 300  Q
    ||||||||||| || || || ||||||| | ||||||| || |||| ||| | ||| ||| ||||||||||||||||||||||||||||| ||| |||||    
T  23024536 agttcattgatacaattctcttcaacccttcctttcatattgaaaatctctcgcacctcagcttgtgctttcttcattattcttggattctttaccattt 23024635  T
Q  301 ctatcattgcccaatct 317  Q
    ||  |||||||||||||    
T  23024636 ctgccattgcccaatct 23024652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 22946476 - 22946587
Alignment:
Q  9 ggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgataaccatgta 108  Q
    ||||||||||| ||||| |||||||| || |||||||| ||| | |||||||||||||| ||||||||| |  | || | |||||||||||||||||  |    
T  22946476 ggataaaacttatctggatcagtccaatattttggatcccttccaattgcccaagcattgattatcaccctactattgattggtatgtgataaccatcaa 22946575  T
Q  109 tctcacatgctt 120  Q
    ||||||||||||    
T  22946576 tctcacatgctt 22946587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 22972023 - 22972134
Alignment:
Q  9 ggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgataaccatgta 108  Q
    ||||||||||| ||||| |||||||| || |||||||| ||| | |||||||||||||| ||||||||| |  | || | |||||||||||||||||  |    
T  22972023 ggataaaacttatctggatcagtccaatattttggatcccttccaattgcccaagcattgattatcaccctacttttgattggtatgtgataaccatcaa 22972122  T
Q  109 tctcacatgctt 120  Q
    ||||||| ||||    
T  22972123 tctcacaagctt 22972134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 22831937 - 22832042
Alignment:
Q  39 tttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctcttggta 138  Q
    |||||||||||| | || ||||||||||| | |||||| ||  | ||||  ||||| | ||| |||| ||||||||||||||| |||||||||||||| |    
T  22831937 tttggatctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatctcacatgcttttccacattctcttggaa 22832036  T
Q  139 gcaaaa 144  Q
    ||||||    
T  22832037 gcaaaa 22832042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 22941472 - 22941367
Alignment:
Q  39 tttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctcttggta 138  Q
    |||||||||||| | || ||||||||||| | |||||| ||  | ||||  ||||| | ||| |||| ||| ||||||||||  |||||||||||||| |    
T  22941472 tttggatctcttccaatggcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatttcacatgcttgtccacattctcttggaa 22941373  T
Q  139 gcaaaa 144  Q
    ||||||    
T  22941372 gcaaaa 22941367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 21779877 - 21780193
Alignment:
Q  1 atctctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgata 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||  || ||||| ||    
T  21779877 atctctctggataaaacatctctggttcagtccagtagtttggatctcttgcaattgcccaagcattgattatcaccttagtcttaatcggaatgtggta 21779976  T
Q  101 accatgtatctcacatgctttaccacattctcttggtagcaaaagaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactg 200  Q
    ||||| ||| |||||||||| || ||||||||| |||| |||||||||| ||| ||| ||||  || | ||||||||||||||||||||||| |||| ||    
T  21779977 accatttatatcacatgcttgactacattctctcggtaacaaaagaggtgctggagggtgtagccttaaggtttctttgacaactgatttcaaataattg 21780076  T
Q  201 agttcattgatgcatttttcatcaacccgttctttcatttttaaaacctccctcacttcatcttgtgctttcttcattattcttggattccttatcattt 300  Q
    |||||||||||||| ||||||||||||| | |||||||||| ||||| || ||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  21780077 agttcattgatgcaattttcatcaacccttcctttcattttgaaaacttctctcacttcatcttgtgctttcttcattattcttggatcccttaccattt 21780176  T
Q  301 ctatcattgcccaatct 317  Q
    ||| |||||||||||||    
T  21780177 ctaccattgcccaatct 21780193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 6690 - 6374
Alignment:
Q  1 atctctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgata 100  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||  || |||  ||||||| |||    
T  6690 atctctctggataaaacctctctggttcagtccagaagtttggatctcttgcaattgcccaagcattgattatcaccttactcctaaacggtatgttata 6591  T
Q  101 accatgtatctcacatgctttaccacattctcttggtagcaaaagaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactg 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| ||||||||||||||||| |||||||||| |||| ||    
T  6590 accatttatctcacatgctttaccacattctcttggtagcaaaagaggtgctggagggtgtaacctaagggtttctttgacgactgatttcaaataattg 6491  T
Q  201 agttcattgatgcatttttcatcaacccgttctttcatttttaaaacctccctcacttcatcttgtgctttcttcattattcttggattccttatcattt 300  Q
    ||||   | ||| | ||||||||||||  | | |||| | | ||||| || | ||| ||| ||||||||||| ||||||||||||| | |||||||||||    
T  6490 agtttgctaatgtaattttcatcaacctttccattcaatgtaaaaacttctcgcacctcagcttgtgctttcatcattattcttggctcccttatcattt 6391  T
Q  301 ctatcattgcccaatct 317  Q
    ||  |||||||||||||    
T  6390 ctgccattgcccaatct 6374  T

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Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 12609969 - 12610245
Alignment:
Q  1 atctctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgata 100  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||| | || ||||| ||||| | |||||||||  | || | ||||||  ||||    
T  12609969 atctctccggataaaacttctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatacgata 12610068  T
Q  101 accatgtatctcacatgctttaccacattctcttggtagcaaaagaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactg 200  Q
     ||||  |||||||||||||  |||||||||||||| || ||||||||  ||| ||||||||| || | ||| ||||| |||||||| || | |||| ||    
T  12610069 cccatcaatctcacatgcttgtccacattctcttggaagtaaaagaggacctggaggatgtaaccttaaggtctctttcacaactgactttaaataagtg 12610168  T
Q  201 agttcattgatgcatttttcatcaacccgttctttcatttttaaaacctccctcacttcatcttgtgctttcttcat 277  Q
    |||||||| || || ||||| |||||   | ||||||| || || |  || || || ||||||||||||||||||||    
T  12610169 agttcatttatacaattttcttcaacatttcctttcatgttgaatatatctcttacctcatcttgtgctttcttcat 12610245  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 15885898 - 15885691
Alignment:
Q  1 atctctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgata 100  Q
    ||||||||||||||||| |||||||||||||||| || |||||||||||| | || ||||| ||||| | |||||||||  | ||   |||||| |||||    
T  15885898 atctctctggataaaacctctctggttcagtccaatactttggatctcttccaatcgcccatgcattgactatcaccttgcttttggttggtatatgata 15885799  T
Q  101 accatgtatctcacatgctttaccacattctcttggtagcaaaagaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactg 200  Q
    |||||  |||||||||||||   ||||||||||||| || ||||||||  ||| ||| ||||| || | ||| ||||| |||||||| |||| |||| ||    
T  15885798 accatcaatctcacatgcttgttcacattctcttggaagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtg 15885699  T
Q  201 agttcatt 208  Q
    || |||||    
T  15885698 agctcatt 15885691  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 12637065 - 12637197
Alignment:
Q  1 atctctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgata 100  Q
    |||||||||||| |||| ||||||||||||||||||| |||||||||||  | |||| ||| ||||| | |||||||||  | ||  ||||||| |||||    
T  12637065 atctctctggatgaaacctctctggttcagtccagtactttggatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgata 12637164  T
Q  101 accatgtatctcacatgctttaccacattctct 133  Q
     || |  || ||||||||||  |||||||||||    
T  12637165 cccttcaatttcacatgcttgtccacattctct 12637197  T

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Target: scaffold0059 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 62217 - 62363
Alignment:
Q  1 atctctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgata 100  Q
    ||||||||||||||||| |||||||||| ||||||||  ||||||||||| |||||||||| ||||||| ||||| ||| || || | |||||| |||||    
T  62217 atctctctggataaaacctctctggttccgtccagtaccttggatctcttccgattgcccatgcattaactatcagctttgttttcattggtatatgata 62316  T
Q  101 accatgtatctcacatgctttaccacattctcttggtagcaaaagag 147  Q
     ||||  |||||||||||||  | |||||||||||| || |||||||    
T  62317 cccatcaatctcacatgcttctctacattctcttggaagtaaaagag 62363  T

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Target: scaffold0059; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 62468 - 62504
Alignment:
Q  252 ctcacttcatcttgtgctttcttcattattcttggat 288  Q
    |||||||||||||||||||||||||| | ||||||||    
T  62468 ctcacttcatcttgtgctttcttcatcactcttggat 62504  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 5594128 - 5594023
Alignment:
Q  39 tttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctcttggta 138  Q
    |||||||||||| | || ||||||||||| | |||||| ||  | ||||  ||||| | ||| |||| ||||||||||||||| |||||||||||||| |    
T  5594128 tttggatctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatctcacatgcttttccacattctcttggaa 5594029  T
Q  139 gcaaaa 144  Q
    ||||||    
T  5594028 gcaaaa 5594023  T

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