View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9292_low_6 (Length: 292)
Name: NF9292_low_6
Description: NF9292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9292_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 114 - 276
Target Start/End: Complemental strand, 44001682 - 44001523
Alignment:
| Q |
114 |
ctagaagaacaactacaagaactagaacttttaacagtatcatcatcatcaagatggacaaagtgatgaggttggcatctgaaaaaggtgtggtgatttt |
213 |
Q |
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| T |
44001682 |
ctagaagaacaactacaagaactagaacttttaacagtatcatcatca---agatggacaaagtgatgaggttggcatctgaaaaaggtgtggtgatttt |
44001586 |
T |
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| Q |
214 |
cacaaagagttcatgttgtctatgctatgcagttaacattctgtttcaagaacttgggattag |
276 |
Q |
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| T |
44001585 |
cacaaagagttcatgttgtctatgctatgcagttaacattctgtttcaagaacttgggattag |
44001523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 44001777 - 44001730
Alignment:
| Q |
20 |
ttaaggtaataaatctaaacaaatattatctcaaacttagactttctc |
67 |
Q |
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| T |
44001777 |
ttaaggtaataaatctaaacaaatattatctcaaacttagactttctc |
44001730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 270
Target Start/End: Original strand, 39865935 - 39866038
Alignment:
| Q |
167 |
atggacaaagtgatgaggttggcatctgaaaaaggtgtggtgattttcacaaagagttcatgttgtctatgctatgcagttaacattctgtttcaagaac |
266 |
Q |
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| T |
39865935 |
atggagaaggtgatgaggttggctacagaaaagggtgtggtggtattcaccaagagctcttgttgtctatgctatgcagtgaacattttgtttcaagaaa |
39866034 |
T |
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| Q |
267 |
ttgg |
270 |
Q |
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|||| |
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| T |
39866035 |
ttgg |
39866038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 39861478 - 39861584
Alignment:
| Q |
164 |
aagatggacaaagtgatgaggttggcatctgaaaaaggtgtggtgattttcacaaagagttcatgttgtctatgctatgcagttaacattctgtttcaag |
263 |
Q |
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| T |
39861478 |
aagatggagaaggtgatgaggttggctacagaaaagggtgttgtgattttcaccaagagctcttgttgtttgtgctatgcagtgaacattttgtttcaag |
39861577 |
T |
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| Q |
264 |
aacttgg |
270 |
Q |
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|| |||| |
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| T |
39861578 |
aaattgg |
39861584 |
T |
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