View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9292_low_7 (Length: 290)
Name: NF9292_low_7
Description: NF9292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9292_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 15506239 - 15506523
Alignment:
| Q |
1 |
ataagattaaaggatgatatgtggaaaagctttaattagattttaagccattaaggcatattgtgctcaagagtgtccgacatgata-gtgcatgtgaat |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
15506239 |
ataagattaaaggatgatatgtggaaaagctttaattagcttttaagccattaaggcatattgtgctcaagagtgtccgacatgacaagtgcatgtgaat |
15506338 |
T |
|
| Q |
100 |
tcggttggaagtttgttatggaaagacatgccacaagaacttccgtagttggatttggtgaatccaatttctgtaccataagaaaaataaccattaccct |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
15506339 |
tcggttggaagtttgttatggaaagacatgccacaagaacttccgtagttggatttggtgaatccattttctgtaccataagaaaaataaccattaccct |
15506438 |
T |
|
| Q |
200 |
tgatgaaaaagttgaaataaaactatgcaacagtagtgttcttgaatcatgtcagaatttattctattatctttagaacacgaaa |
284 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15506439 |
tgatgaaaaagttgaaataaaactatgcaacagcagtgttcttgaatcatgtcagaatttattctattatctttagaacacgaaa |
15506523 |
T |
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