View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9293_high_1 (Length: 334)

Name: NF9293_high_1
Description: NF9293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9293_high_1
NF9293_high_1
[»] chr6 (2 HSPs)
chr6 (11-208)||(8531002-8531199)
chr6 (236-323)||(8531227-8531314)
[»] chr5 (3 HSPs)
chr5 (11-208)||(5155038-5155235)
chr5 (236-320)||(5154926-5155010)
chr5 (131-208)||(3384444-3384521)
[»] chr1 (3 HSPs)
chr1 (11-201)||(19397512-19397697)
chr1 (14-52)||(16003412-16003450)
chr1 (14-54)||(26794648-26794688)
[»] chr3 (1 HSPs)
chr3 (29-172)||(26305778-26305920)
[»] chr8 (1 HSPs)
chr8 (14-47)||(40721628-40721661)


Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 8531002 - 8531199
Alignment:
Q  11 ttattctaccatttgaagctgcttcaaagaattttcatatcagatgcattgtggctgtaacagaatcaaatatggagtgccattggatttggtggctata 110  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8531002 ttattctaccatttgaagctgctttaaagaattttcatatcagatgcattgtggctgtagcagaatcaaatatggagtgccattggatttggtggctata 8531101  T
Q  111 tgggtaacttggaggagctccatataaaattaaaatgatgctactgattgaagacttgtaattatatacacttgtgaacatattttggttaaactatt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8531102 tgggtaacttggaggagctccatataaaattaaaatgatgctactgtttgaagacttgtaattatatacacttgtaaacatattttggttaaactatt 8531199  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 236 - 323
Target Start/End: Original strand, 8531227 - 8531314
Alignment:
Q  236 tattttggtcagagctagattttgtcaagctttgatggatgtagctgtttaagctcatttgtatagtggagactacaaagggagggag 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8531227 tattttggtcagagctagattttgtcaagctttgatggatgtagctgtttaagctcatttgtatagtggagactacaaagggagggag 8531314  T

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Target: chr5 (Bit Score: 166; Significance: 8e-89; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 5155235 - 5155038
Alignment:
Q  11 ttattctaccatttgaagctgcttcaaagaattttcatatcagatgcattgtggctgtaacagaatcaaatatggagtgccattggatttggtggctata 110  Q
    |||||||||||||||||| ||||| |||||||||| ||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5155235 ttattctaccatttgaagttgcttgaaagaatttttataccagatgcactgtggctgtagcagaatcaaatatggagtgccattggatttggtggctata 5155136  T
Q  111 tgggtaacttggaggagctccatataaaattaaaatgatgctactgattgaagacttgtaattatatacacttgtgaacatattttggttaaactatt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5155135 tgggtaacttggaggagctccatataaaattaaaatgatgctactgtctgaagacttgtaattatatacacttgtgaacatattttggttaaactatt 5155038  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 236 - 320
Target Start/End: Complemental strand, 5155010 - 5154926
Alignment:
Q  236 tattttggtcagagctagattttgtcaagctttgatggatgtagctgtttaagctcatttgtatagtggagactacaaagggagg 320  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  5155010 tattttggtcagagttagattttgtcaagctttgatggatgtagctatttaagctcatttgtataatggagactacaaagggagg 5154926  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 3384521 - 3384444
Alignment:
Q  131 catataaaattaaaatgatgctactgattgaagacttgtaattatatacacttgtgaacatattttggttaaactatt 208  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  3384521 catataaaattaaaatgatgctactgtttgaagacttgtaattatatatccttgtgaacatattttggttagactatt 3384444  T

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Target: chr1 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 11 - 201
Target Start/End: Complemental strand, 19397697 - 19397512
Alignment:
Q  11 ttattctaccatttgaagctgcttcaaagaattttcatatcagatgcattgtggctgtaacagaatcaaatatggagtgccattggatttggtggctata 110  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||| |     ||||||||||||||    
T  19397697 ttattctaccatttgaagctgcttgaaagaattttcatatcagatgcattgtggctatagcagaatcaaatatggagtgtc-----atttggtggctata 19397603  T
Q  111 tgggtaacttggaggagctccatataaaattaaaatgatgctactgattgaagacttgtaattatatacacttgtgaacatattttggtta 201  Q
    |||||||| ||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||    
T  19397602 tgggtaacctggagtagctccatataaatttaaaatgatgctactgtttgaagacttgtaattatatacacttatgaacatactttggtta 19397512  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 16003450 - 16003412
Alignment:
Q  14 ttctaccatttgaagctgcttcaaagaattttcatatca 52  Q
    ||||||||||||||||||||| |||||||||||| ||||    
T  16003450 ttctaccatttgaagctgcttgaaagaattttcacatca 16003412  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 26794688 - 26794648
Alignment:
Q  14 ttctaccatttgaagctgcttcaaagaattttcatatcaga 54  Q
    |||||||||||||||||||||  ||||||||||| ||||||    
T  26794688 ttctaccatttgaagctgcttgtaagaattttcacatcaga 26794648  T

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Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 29 - 172
Target Start/End: Complemental strand, 26305920 - 26305778
Alignment:
Q  29 ctgcttcaaagaattttcatatcagatgcattgtggctgtaacagaatcaaatatggagtgccattggatttggtggctatatgggtaacttggaggagc 128  Q
    |||||| ||||||||||||||||| ||||||||||||  ||  |||||||||||||||||| ||||| |||||||||| |||||| |||| ||||||| |    
T  26305920 ctgcttaaaagaattttcatatca-atgcattgtggccatagaagaatcaaatatggagtggcattgaatttggtggcaatatggataacctggaggatc 26305822  T
Q  129 tccatataaaattaaaatgatgctactgattgaagacttgtaat 172  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  26305821 tccatataaaattaaaatgatgctactgtttgaagacttgtaat 26305778  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 40721661 - 40721628
Alignment:
Q  14 ttctaccatttgaagctgcttcaaagaattttca 47  Q
    ||||||||||||||||||||| ||||||||||||    
T  40721661 ttctaccatttgaagctgcttgaaagaattttca 40721628  T

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