View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9293_low_1 (Length: 674)
Name: NF9293_low_1
Description: NF9293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9293_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 633; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 13 - 657
Target Start/End: Complemental strand, 28733485 - 28732841
Alignment:
| Q |
13 |
tttcgtgttctccagtcgttcaaaggcacttctaatctgcaatgtgctttggatatactcattctgatatcttacctcggcaccatccagtgcagatttt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28733485 |
tttcgtgttctccagtcgttcaaaggcacttctaatctgcaatgtgctttggatatactcattctgatatcttacctcggcaccatccagtgcagatttt |
28733386 |
T |
|
| Q |
113 |
aactgccctgcttcagctttaacggaaacaagctcggctttgagccggtttatctcctcgctttctacaacttccaatgcaggtaagcgaggagataaac |
212 |
Q |
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| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28733385 |
agctgccctgcttcagctttaactgaaacaagctcggctttgagccggtttatctcctcgctttctacaacttccaatgcaggtaagcgaggagataaac |
28733286 |
T |
|
| Q |
213 |
cgactccactgaccaaatcatcctgaagtttgctcacaagttcctccagtgagcttacttgagaccttgatttctctaactctaaagctaaggattggta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28733285 |
cgactccactgaccaaatcatcctgaagtttgctcacaagttcctccagtgagcttacttgagaccttgatttctctaactctaaagctaaggattggta |
28733186 |
T |
|
| Q |
313 |
atcttctgacgcttttgcaccttctaatcggagcgtttccactgtcttatttgcagcttccaattgcatttgagttgtaccaagtgtttccaatgcctgt |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28733185 |
atcttctgacgcttttgcaccttctaatcggagcgtttccactgtcttatttgcagcttccaattgcatttgagttgtaccaactgtttccaatgcctgt |
28733086 |
T |
|
| Q |
413 |
gattcagattctctacaatggctcacctcatttttcatctttgcaattaaagagagtgtttcatcaagctccatcctcaagtcttgaatctcagcatcag |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28733085 |
gattcagattctctacaatggctcacctcatttttcatctttgcaattaaagagagtgtttcatcaagctccatcctcaagtcttgaatctcagcatcag |
28732986 |
T |
|
| Q |
513 |
ctgactcagcattgtcaatccgggtagcttcggattcacgtgctctttcaagttgcattttcagtttctggatttcattcattgcagatgctaaagcagc |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28732985 |
ctgactcagcattgtcaatccgggtagcttcggattcacgtgctctttcaagttgcattttcagtttctggatttcattcattgcagatgctaaagcagc |
28732886 |
T |
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| Q |
613 |
tgagtccattgaatgctgtttctggacagcctctagttcagactg |
657 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28732885 |
tgagtccattgaatgctgtttctggacagcctctagttcagactg |
28732841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 238 - 384
Target Start/End: Complemental strand, 22110127 - 22109981
Alignment:
| Q |
238 |
aagtttgctcacaagttcctccagtgagcttacttgagaccttgatttctctaactctaaagctaaggattggtaatcttctgacgcttttgcaccttct |
337 |
Q |
| |
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|||||| |||||||||||||||| || || ||||||| ||||||| ||| ||||| ||||||||||| | |||| |||| | |||||| ||| ||| |
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| T |
22110127 |
aagtttcctcacaagttcctccaaggactttgcttgagatcttgattgctccaactccaaagctaaggacttgtaagcttcagttgcttttagaccatct |
22110028 |
T |
|
| Q |
338 |
aatcggagcgtttccactgtcttatttgcagcttccaattgcatttg |
384 |
Q |
| |
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||||||| |||||||||||||||||| | | ||||||||||||||| |
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| T |
22110027 |
gatcggagtgtttccactgtcttatttaccgtttccaattgcatttg |
22109981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 238 - 384
Target Start/End: Original strand, 40584462 - 40584608
Alignment:
| Q |
238 |
aagtttgctcacaagttcctccagtgagcttacttgagaccttgatttctctaactctaaagctaaggattggtaatcttctgacgcttttgcaccttct |
337 |
Q |
| |
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|||||| |||||||||||||||| || || ||||||| ||||||| ||| ||||| ||||||||||| | |||| |||| | |||||| ||| ||| |
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| T |
40584462 |
aagtttcctcacaagttcctccaaggactttgcttgagatcttgattgctccaactccaaagctaaggacttgtaagcttcagttgcttttagaccatct |
40584561 |
T |
|
| Q |
338 |
aatcggagcgtttccactgtcttatttgcagcttccaattgcatttg |
384 |
Q |
| |
|
||||||| |||||||||||||||||| | | ||||||||||||||| |
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|
| T |
40584562 |
gatcggagtgtttccactgtcttatttaccgtttccaattgcatttg |
40584608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 38 - 171
Target Start/End: Complemental strand, 22110303 - 22110170
Alignment:
| Q |
38 |
gcacttctaatctgcaatgtgctttggatatactcattctgatatcttacctcggcaccatccagtgcagattttaactgccctgcttcagctttaacgg |
137 |
Q |
| |
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||||||||||||||||||||||| ||||| || || | || ||||||| ||||||| |||||| ||||||||| |||||| || |||||| ||| | | |
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| T |
22110303 |
gcacttctaatctgcaatgtgctctggatgtattcttcttggtatcttatctcggcaacatccaatgcagatttcaactgctctacttcagatttggcag |
22110204 |
T |
|
| Q |
138 |
aaacaagctcggctttgagccggtttatctcctc |
171 |
Q |
| |
|
| | |||| |||||||||||| ||||||||||| |
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|
| T |
22110203 |
agataagcgcggctttgagcccatttatctcctc |
22110170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 38 - 171
Target Start/End: Original strand, 40584286 - 40584419
Alignment:
| Q |
38 |
gcacttctaatctgcaatgtgctttggatatactcattctgatatcttacctcggcaccatccagtgcagattttaactgccctgcttcagctttaacgg |
137 |
Q |
| |
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||||||||||||||||||||||| ||||| || || | || ||||||| ||||||| |||||| ||||||||| |||||| || |||||| ||| | | |
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| T |
40584286 |
gcacttctaatctgcaatgtgctctggatgtattcttcttggtatcttatctcggcaacatccaatgcagatttcaactgctctacttcagatttggcag |
40584385 |
T |
|
| Q |
138 |
aaacaagctcggctttgagccggtttatctcctc |
171 |
Q |
| |
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| | |||| |||||||||||| ||||||||||| |
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| T |
40584386 |
agataagcgcggctttgagcccatttatctcctc |
40584419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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