View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9293_low_10 (Length: 382)

Name: NF9293_low_10
Description: NF9293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9293_low_10
NF9293_low_10
[»] chr1 (14 HSPs)
chr1 (11-366)||(33546198-33546553)
chr1 (11-366)||(33541453-33541808)
chr1 (269-360)||(17603386-17603478)
chr1 (269-349)||(42174842-42174923)
chr1 (291-358)||(3234039-3234107)
chr1 (272-358)||(24915056-24915143)
chr1 (263-327)||(5709637-5709700)
chr1 (270-358)||(47432074-47432162)
chr1 (269-358)||(473142-473232)
chr1 (269-349)||(36872719-36872799)
chr1 (269-349)||(49938734-49938815)
chr1 (263-354)||(1510306-1510398)
chr1 (269-355)||(51929541-51929628)
chr1 (277-358)||(30581780-30581861)
[»] chr4 (12 HSPs)
chr4 (269-355)||(7839363-7839450)
chr4 (269-358)||(54069419-54069509)
chr4 (269-346)||(50662740-50662818)
chr4 (269-358)||(50681091-50681181)
chr4 (290-348)||(39691166-39691225)
chr4 (269-349)||(46588075-46588157)
chr4 (293-358)||(9760418-9760484)
chr4 (269-364)||(46592211-46592308)
chr4 (272-358)||(17822870-17822957)
chr4 (269-349)||(21731658-21731739)
chr4 (292-364)||(42685396-42685469)
chr4 (271-327)||(44862988-44863044)
[»] chr6 (3 HSPs)
chr6 (269-366)||(34430686-34430783)
chr6 (269-354)||(6536597-6536683)
chr6 (290-358)||(6538490-6538559)
[»] chr2 (9 HSPs)
chr2 (269-341)||(43279531-43279604)
chr2 (273-336)||(23956038-23956101)
chr2 (290-360)||(39073712-39073783)
chr2 (269-349)||(12194939-12195020)
chr2 (269-348)||(32592574-32592654)
chr2 (292-358)||(12464498-12464565)
chr2 (269-339)||(26202025-26202096)
chr2 (269-349)||(20952342-20952423)
chr2 (269-326)||(36125372-36125429)
[»] chr7 (10 HSPs)
chr7 (269-348)||(38138481-38138561)
chr7 (290-357)||(45338428-45338495)
chr7 (290-359)||(31744286-31744356)
chr7 (292-357)||(43694595-43694661)
chr7 (269-357)||(19022587-19022676)
chr7 (294-357)||(46280299-46280363)
chr7 (269-360)||(19302565-19302653)
chr7 (316-358)||(33601459-33601501)
chr7 (293-358)||(40377878-40377944)
chr7 (290-354)||(420342-420407)
[»] chr3 (13 HSPs)
chr3 (269-360)||(4401023-4401112)
chr3 (273-360)||(39980705-39980793)
chr3 (269-358)||(20257513-20257604)
chr3 (272-349)||(18405836-18405914)
chr3 (269-358)||(20880454-20880544)
chr3 (269-358)||(35959458-35959548)
chr3 (277-357)||(47132310-47132391)
chr3 (269-364)||(30443865-30443961)
chr3 (272-342)||(4526373-4526444)
chr3 (264-327)||(35696248-35696311)
chr3 (292-358)||(36631076-36631143)
chr3 (295-359)||(49034291-49034356)
chr3 (269-367)||(49556826-49556926)
[»] chr5 (7 HSPs)
chr5 (272-357)||(16457984-16458070)
chr5 (273-360)||(16937889-16937977)
chr5 (274-354)||(6587114-6587195)
chr5 (269-324)||(42500244-42500298)
chr5 (290-359)||(29925818-29925888)
chr5 (269-364)||(32009664-32009761)
chr5 (295-358)||(12554497-12554561)
[»] chr8 (5 HSPs)
chr8 (292-355)||(6881908-6881971)
chr8 (289-359)||(15180518-15180589)
chr8 (269-358)||(16825540-16825629)
chr8 (269-357)||(26771244-26771333)
chr8 (270-349)||(11861791-11861871)
[»] scaffold0050 (1 HSPs)
scaffold0050 (269-338)||(58740-58810)
[»] scaffold0147 (1 HSPs)
scaffold0147 (290-327)||(23641-23678)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 366
Target Start/End: Original strand, 33546198 - 33546553
Alignment:
Q  11 caaaggacatagagcaattacctataacaggaagtatatgcttgcacacatccaagaaaggctgtgacagaatttctccctgttcagactttacatgctt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33546198 caaaggacatagagcaattacctataacaggaagtatatgcttgcacacatccaagaaaggctgtgacagaatttctccctgttcagactttacatgctt 33546297  T
Q  111 tattccttccaatgtagcagcgaaaacagtcccttccannnnnnngttttgctgcacatgacacatccataactcaataaacatacaagtaaaagttgaa 210  Q
    ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||| |||||||||||||||| |||||||||| || ||    
T  33546298 tattccttccaatgtagcagcgaaaacagtcccttccatttttgtgttttgctgcacatgacacatgcataactcaataaacaaacaagtaaaa-tttaa 33546396  T
Q  211 cagaccaagggctgtttcgattggcttatttgtgcttgttgactgacataagttttgtcaattttcataagctgtttcaaacttattttcacaagttctt 310  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| ||||    
T  33546397 cagaccaagggctgtttcgattggcttatttgtgcctgttgactgacataagttttgtcaattttcataagctttttcaaacgtattttcataagctctt 33546496  T
Q  311 caatctagcttat-aaaacaacttaaagcatatacaaaaagaatttaacgtcattat 366  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||    
T  33546497 caatctagcttataaaaacaacttagagcatatacaaaaagaatttagcgtcattat 33546553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 366
Target Start/End: Original strand, 33541453 - 33541808
Alignment:
Q  11 caaaggacatagagcaattacctataacaggaagtatatgcttgcacacatccaagaaaggctgtgacagaatttctccctgttcagactttacatgctt 110  Q
    |||||||| ||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33541453 caaaggacgtagagtaatgacctataacaggaagtatatgcttgcaaacatccaagaaaggctgtgacagaatttctccctgttcagactttatatgctt 33541552  T
Q  111 tattccttccaatgtagcagcgaaaacagtcccttccannnnnnngttttgctgcacatgacacatccataactcaataaacatacaagtaaaagttgaa 210  Q
     |||||||||||||||| ||||||||| ||||||||||        |||||||||| ||||||||||||||||||||||||||||||| |||||||| ||    
T  33541553 cattccttccaatgtaggagcgaaaacggtcccttccatttttgtattttgctgcagatgacacatccataactcaataaacatacaaataaaagttcaa 33541652  T
Q  211 cagaccaaggg-ctgtttcgattggcttatttgtgc-ttgttgactgacataagttttgtcaattttcataagctgtttcaaacttattttcacaagttc 308  Q
    ||||||||||| |||||||||||||||||||||||| || || |||||||||||||||||| ||||||||||||   ||||||||||||| || ||||||    
T  33541653 cagaccaagggcctgtttcgattggcttatttgtgctttatttactgacataagttttgtcgattttcataagc---ttcaaacttatttacataagttc 33541749  T
Q  309 ttcaatctagcttat-aaaacaacttaaagcatatacaaaaagaatttaacgtcattat 366  Q
    || |||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||    
T  33541750 tttaatctagcttataaaaacaacttagagcatgtacaaaaagaatttaacatcattat 33541808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 269 - 360
Target Start/End: Original strand, 17603386 - 17603478
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaagaatttaacgt 360  Q
    |||||||||||| || |||  |||||||||||| ||||||| |||| |||||||| ||||||||||| |||||||||||||| ||||||||||    
T  17603386 caattttcataaactttttacaacttattttcagaagttctccaatatagcttataaaaacaacttatagcatatacaaaaacaatttaacgt 17603478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 269 - 349
Target Start/End: Complemental strand, 42174923 - 42174842
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaa 349  Q
    |||||||||||||||||||  |||||||||||| ||||||| |||| || ||||| ||||||||||| ||||||||||||||    
T  42174923 caattttcataagctgtttttaacttattttcataagttctccaatataacttataaaaacaacttatagcatatacaaaaa 42174842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 358
Target Start/End: Original strand, 3234039 - 3234107
Alignment:
Q  291 acttattttcacaagttcttcaatctagcttataaaa-caacttaaagcatatacaaaaagaatttaac 358  Q
    ||||||||||| ||||||| |||| |||||||||||| ||||||| |||||||||||||| ||||||||    
T  3234039 acttattttcataagttctccaatatagcttataaaaacaacttatagcatatacaaaaacaatttaac 3234107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 358
Target Start/End: Original strand, 24915056 - 24915143
Alignment:
Q  272 ttttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaagaatttaac 358  Q
    |||||||||||| |||  |||||||||||||||||||| |||   ||||||| |||||| |||| |||||||||||||| ||||||||    
T  24915056 ttttcataagcttttttcaacttattttcacaagttctccaagacagcttatgaaaacagcttatagcatatacaaaaacaatttaac 24915143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 263 - 327
Target Start/End: Complemental strand, 5709700 - 5709637
Alignment:
Q  263 ttttgtcaattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttataaaa 327  Q
    ||||| ||||||||||||||| |||||| |||||||||||||||||| |||| |||||| |||||    
T  5709700 ttttggcaattttcataagctttttcaa-cttattttcacaagttctccaatatagcttctaaaa 5709637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 358
Target Start/End: Complemental strand, 47432162 - 47432074
Alignment:
Q  270 aattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttataaaacaacttaaagcatatacaaaaagaatttaac 358  Q
    |||||||| ||||| |||  | |||||||||| || ||||||||| || ||||||||||| |||| ||||||| |||||| ||||||||    
T  47432162 aattttcacaagcttttttcagcttattttcataaattcttcaatataacttataaaacaccttatagcatattcaaaaacaatttaac 47432074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 358
Target Start/End: Complemental strand, 473232 - 473142
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaagaatttaac 358  Q
    ||||||||||||||| |||  |||||||||||| ||||||| ||||  | ||||| ||||||||||| |||||| || |||| ||||||||    
T  473232 caattttcataagcttttttcaacttattttcataagttctccaatagaacttataaaaacaacttatagcatacacgaaaacaatttaac 473142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 349
Target Start/End: Complemental strand, 36872799 - 36872719
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaa 349  Q
    ||||||| ||||||| |||||| |||||||||| ||||||| |||| |||||| | ||||||||||| |||| |||||||||    
T  36872799 caattttgataagctttttcaa-cttattttcataagttctgcaatatagcttgtaaaaacaacttatagcacatacaaaaa 36872719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 349
Target Start/End: Complemental strand, 49938815 - 49938734
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaa 349  Q
    ||||||||| ||||| |||  |||||||||||| |||||||  ||| |||||||| ||||||||||| | ||||||||||||    
T  49938815 caattttcaaaagcttttttcaacttattttcataagttctctaatatagcttataaaaacaacttataacatatacaaaaa 49938734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 354
Target Start/End: Original strand, 1510306 - 1510398
Alignment:
Q  263 ttttgtcaattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaagaatt 354  Q
    ||||| ||||||||||||||| |||  |||||||||||  ||||||| ||||  ||||||| ||||||||||| | | |||||||||| ||||    
T  1510306 ttttgccaattttcataagcttttttcaacttattttcgtaagttctccaatagagcttataaaaacaacttataacctatacaaaaacaatt 1510398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 51929541 - 51929628
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaagaattt 355  Q
    ||||||||||||||| |||  ||||||||| || ||||||| |||| ||| |||| |||||| ||||| ||||||| ||||| |||||    
T  51929541 caattttcataagcttttttcaacttatttccataagttctccaatatagtttataaaaacagcttaaggcatatataaaaacaattt 51929628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 358
Target Start/End: Complemental strand, 30581861 - 30581780
Alignment:
Q  277 ataagctgtttcaaacttattttcacaagttcttcaatctagcttataaaacaacttaaagcatatacaaaaagaatttaac 358  Q
    |||||||||||  |||||||||||| ||| ||   ||| | |||||||||| |||||| |||||||| ||||| ||||||||    
T  30581861 ataagctgttttcaacttattttcataagctcccaaatatggcttataaaaaaacttatagcatataaaaaaacaatttaac 30581780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 7839363 - 7839450
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaagaattt 355  Q
    ||||||||||||||| |||  |||||||||||  ||||||||||||||||||||| ||||||| ||| |||||||||||||| |||||    
T  7839363 caattttcataagcttttttcaacttattttcgtaagttcttcaatctagcttataaaaacaatttatagcatatacaaaaacaattt 7839450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 269 - 358
Target Start/End: Original strand, 54069419 - 54069509
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaagaatttaac 358  Q
    |||||||||||||||||||  |||||||||||| | |||||||||| || ||||| ||||||| ||| |||||||||||||| ||||||||    
T  54069419 caattttcataagctgtttttaacttattttcatatgttcttcaatataacttataaaaacaaattatagcatatacaaaaacaatttaac 54069509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 269 - 346
Target Start/End: Original strand, 50662740 - 50662818
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttata-aaacaacttaaagcatatacaa 346  Q
    ||||||||||||||| |||  ||||||||||||||| |||| |||| ||||||||| |||||||||| |||||||||||    
T  50662740 caattttcataagcttttttcaacttattttcacaatttctccaatatagcttatataaacaacttatagcatatacaa 50662818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 269 - 358
Target Start/End: Original strand, 50681091 - 50681181
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttata-aaacaacttaaagcatatacaaaaagaatttaac 358  Q
    ||||||||||||||| |||  || ||||||||| || |||| |||| ||||||||| |||||||||| |||||||||||||| ||||||||    
T  50681091 caattttcataagcttttttcaatttattttcataatttctccaatatagcttatataaacaacttatagcatatacaaaaacaatttaac 50681181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 39691166 - 39691225
Alignment:
Q  290 aacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaa 348  Q
    |||||||||||  |||||||||||| |||||||| ||||||||||| |||||||||||||    
T  39691166 aacttattttcgtaagttcttcaatatagcttataaaaacaacttatagcatatacaaaa 39691225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 349
Target Start/End: Original strand, 46588075 - 46588157
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat--aaaacaacttaaagcatatacaaaaa 349  Q
    ||||||||||||||  |||| |||||||||||| ||||||| |||| || |||||  ||||||||||| |||||||| |||||    
T  46588075 caattttcataagccttttccaacttattttcataagttctccaatataacttataaaaaacaacttatagcatatataaaaa 46588157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 358
Target Start/End: Complemental strand, 9760484 - 9760418
Alignment:
Q  293 ttattttcacaagttcttcaatctagcttataaaa-caacttaaagcatatacaaaaagaatttaac 358  Q
    ||||||||| ||||||| |||| |||||||||||| ||||||| |||||||  ||||||||||||||    
T  9760484 ttattttcataagttctccaatatagcttataaaaacaacttatagcatattaaaaaagaatttaac 9760418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 364
Target Start/End: Original strand, 46592211 - 46592308
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat--aaaacaacttaaagcatatacaaaaagaatttaacgtcatt 364  Q
    ||||||||||||||  |||| |||||||||||| ||||||| |||| || |||||  ||||||||||| | |||||| ||||  |||||| |||||||    
T  46592211 caattttcataagccttttccaacttattttcataagttctccaatataacttataaaaaacaacttataacatatataaaatcaatttaccgtcatt 46592308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 272 - 358
Target Start/End: Original strand, 17822870 - 17822957
Alignment:
Q  272 ttttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaagaatttaac 358  Q
    |||||||||||| |||  | |||||||||| ||||||| |||  |||||||| ||||||||||| |||||||| || || ||||||||    
T  17822870 ttttcataagctttttttagcttattttcataagttctccaagatagcttatgaaaacaacttatagcatataaaataacaatttaac 17822957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 349
Target Start/End: Original strand, 21731658 - 21731739
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaa 349  Q
    |||||||||||| || |||  |||||| ||||| || |||| |||| |||||||| ||||||||||| |||| |||||||||    
T  21731658 caattttcataaacttttttcaacttactttcataaattctccaatatagcttataaaaacaacttatagcacatacaaaaa 21731739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 364
Target Start/End: Complemental strand, 42685469 - 42685396
Alignment:
Q  292 cttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaagaatttaacgtcatt 364  Q
    |||||||||||| ||||| |||  |||||||| ||||||||||| ||| |||| ||||| |||||||| |||||    
T  42685469 cttattttcacacgttctccaaaatagcttatgaaaacaacttagagcttataaaaaaacaatttaacttcatt 42685396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 327
Target Start/End: Original strand, 44862988 - 44863044
Alignment:
Q  271 attttcataagctgtttcaaacttattttcacaagttcttcaatctagcttataaaa 327  Q
    ||||||||||||| |||  ||||||||| || ||||||| |||| ||||||||||||    
T  44862988 attttcataagcttttttcaacttatttgcataagttctacaatttagcttataaaa 44863044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 269 - 366
Target Start/End: Complemental strand, 34430783 - 34430686
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttataaa-acaacttaaagcatatacaaaaagaatttaacgtcattat 366  Q
    ||||||||||| ||| ||||||||||||||||| ||||||||| |||| ||||||||| |||  |   ||||||||| |||||||||||||||||||||    
T  34430783 caattttcatatgctttttcaaacttattttcataagttcttcgatcttgcttataaagacatttcggagcatatac-aaaagaatttaacgtcattat 34430686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 269 - 354
Target Start/End: Complemental strand, 6536683 - 6536597
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaagaatt 354  Q
    ||||||||||||||| |||  |||||||||||| || |||| |||| |||||| | ||||||||||| |||||||||||||| ||||    
T  6536683 caattttcataagcttttttcaacttattttcataaattctccaatatagcttctaaaaacaacttatagcatatacaaaaacaatt 6536597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 6538559 - 6538490
Alignment:
Q  290 aacttattttcacaagttcttcaatctagcttataaaa-caacttaaagcatatacaaaaagaatttaac 358  Q
    |||||||||| | ||||||| |||| |||| ||||||| ||||||| |||||||||| ||| ||||||||    
T  6538559 aacttattttaataagttctccaatatagcctataaaaacaacttatagcatatacataaacaatttaac 6538490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 43279531 - 43279604
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcata 341  Q
    ||||||||||||||| |||  |||||||||||||||||||| |||| |||||||| ||||||||||| ||||||    
T  43279531 caattttcataagcttttttcaacttattttcacaagttctccaatatagcttataaaaacaacttatagcata 43279604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 336
Target Start/End: Original strand, 23956038 - 23956101
Alignment:
Q  273 tttcataagctgtttcaaacttattttcacaagttcttcaatctagcttataaaacaacttaaa 336  Q
    ||||||||||| |||  |||||||||||| || |||||||||  ||||||||||||||||||||    
T  23956038 tttcataagcttttttcaacttattttcataaattcttcaatacagcttataaaacaacttaaa 23956101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 290 - 360
Target Start/End: Original strand, 39073712 - 39073783
Alignment:
Q  290 aacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaagaatttaacgt 360  Q
    ||||||||||||| |||||| |||| |||||||| ||||  ||||| |||||||||||||| ||||||||||    
T  39073712 aacttattttcactagttctccaatatagcttataaaaattacttatagcatatacaaaaacaatttaacgt 39073783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 349
Target Start/End: Complemental strand, 12195020 - 12194939
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttata-aaacaacttaaagcatatacaaaaa 349  Q
    ||||||||||||||| |||  |||||||||||||||||||| |||| || |||||| ||||||| || | ||||||| ||||    
T  12195020 caattttcataagcttttttcaacttattttcacaagttctccaatataacttatataaacaacctataacatataccaaaa 12194939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 348
Target Start/End: Complemental strand, 32592654 - 32592574
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaa 348  Q
    ||||||||||||||| ||   |||||||||||| ||||||| |||| | |||||| ||||||||||| ||| |||||||||    
T  32592654 caattttcataagcttttctcaacttattttcataagttctccaatattgcttataaaaacaacttatagcgtatacaaaa 32592574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 292 - 358
Target Start/End: Original strand, 12464498 - 12464565
Alignment:
Q  292 cttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaagaatttaac 358  Q
    |||||||||||||||||| |||  |||||||| |||| | |||| |||||||||||||| ||||||||    
T  12464498 cttattttcacaagttctccaagatagcttatgaaaatagcttatagcatatacaaaaacaatttaac 12464565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 339
Target Start/End: Complemental strand, 26202096 - 26202025
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagca 339  Q
    ||||||||||||||| |||  |||||||||||| ||||||| |||| || ||||| ||||||||||| ||||    
T  26202096 caattttcataagcttttttcaacttattttcataagttctccaatatatcttataaaaacaacttatagca 26202025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 349
Target Start/End: Complemental strand, 20952423 - 20952342
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaa 349  Q
    |||||||||| | || |||  |||||||||||| ||||||| |||| ||||| || ||||||||||| |||||||| |||||    
T  20952423 caattttcattaacttttttcaacttattttcataagttctccaatatagctaataaaaacaacttatagcatataaaaaaa 20952342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 326
Target Start/End: Complemental strand, 36125429 - 36125372
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttataaa 326  Q
    |||||||| |||||| |||  |||||||||||| ||||||| |||| |||||||||||    
T  36125429 caattttcgtaagctttttttaacttattttcataagttctccaatttagcttataaa 36125372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 38138481 - 38138561
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaa 348  Q
    ||||||||||||||| |||  |||||||||||| |||||| ||||| ||||| || ||||||||||| |||||||||||||    
T  38138481 caattttcataagcttttttcaacttattttcataagttcgtcaatatagctaataaaaacaacttatagcatatacaaaa 38138561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 290 - 357
Target Start/End: Complemental strand, 45338495 - 45338428
Alignment:
Q  290 aacttattttcacaagttcttcaatctagcttataaaacaacttaaagcatatacaaaaagaatttaa 357  Q
    ||||||||||||  |||||| |||| ||||||| ||||||||||| |||||||||||||| |||||||    
T  45338495 aacttattttcatcagttctccaatatagcttaaaaaacaacttacagcatatacaaaaacaatttaa 45338428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 290 - 359
Target Start/End: Complemental strand, 31744356 - 31744286
Alignment:
Q  290 aacttattttcacaagttcttcaatctagcttataaaa-caacttaaagcatatacaaaaagaatttaacg 359  Q
    |||||||||||| |||||||||||| ||| ||||||||  |||||||||||||| |||||| |||||||||    
T  31744356 aacttattttcataagttcttcaatatagtttataaaattaacttaaagcatatccaaaaacaatttaacg 31744286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 43694595 - 43694661
Alignment:
Q  292 cttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaagaatttaa 357  Q
    |||||||||| ||||||||| || |||||||| |||||| |||| |||||||||||||| |||||||    
T  43694595 cttattttcataagttcttcgatatagcttataaaaacagcttatagcatatacaaaaacaatttaa 43694661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 357
Target Start/End: Original strand, 19022587 - 19022676
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaagaatttaa 357  Q
    ||||||||||||| ||| |  |||||||||||| ||||||| |||| |||||||| ||||||||||| ||||| ||  |||| |||||||    
T  19022587 caattttcataagttgtcttcaacttattttcataagttctccaatatagcttataaaaacaacttatagcatttattaaaacaatttaa 19022676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 46280299 - 46280363
Alignment:
Q  294 tattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaagaatttaa 357  Q
    |||||||| ||||||| |||| |||||||| |||||| |||| |||||||||||||| |||||||    
T  46280299 tattttcataagttctccaatatagcttataaaaacagcttatagcatatacaaaaacaatttaa 46280363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 360
Target Start/End: Original strand, 19302565 - 19302653
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttataaaa-caacttaaagcatatacaaaaagaatttaacgt 360  Q
    |||||||||||| || |||  |||||||||||| ||||||||     |||||||||||| ||||||| | |||||||||||| ||||||||||    
T  19302565 caattttcataaacttttttcaacttattttcataagttctta----tagcttataaaaacaacttataacatatacaaaaacaatttaacgt 19302653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 358
Target Start/End: Original strand, 33601459 - 33601501
Alignment:
Q  316 tagcttataaaacaacttaaagcatatacaaaaagaatttaac 358  Q
    ||||||||||||||||||| |||| ||||||||| ||||||||    
T  33601459 tagcttataaaacaacttatagcaaatacaaaaataatttaac 33601501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 358
Target Start/End: Original strand, 40377878 - 40377944
Alignment:
Q  293 ttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaagaatttaac 358  Q
    ||||||||| ||||||| |||| ||| |||| ||||||||||  | |||||||||||||||||||||    
T  40377878 ttattttcataagttctccaatataggttatgaaaacaacttgcaacatatacaaaaagaatttaac 40377944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 420407 - 420342
Alignment:
Q  290 aacttattttcacaagttcttcaatctagcttata-aaacaacttaaagcatatacaaaaagaatt 354  Q
    |||||||||||| ||||||| |||| |||||||   |||||||||| |||||||||||||| ||||    
T  420407 aacttattttcataagttctccaatatagcttacggaaacaacttatagcatatacaaaaacaatt 420342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 269 - 360
Target Start/End: Complemental strand, 4401112 - 4401023
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttataaaacaacttaaagcatatacaaaaagaatttaacgt 360  Q
    |||||| ||||||||||||  |||||||||||| ||||||| |||| || ||||  |||||||||| ||||||||| |||| ||||||||||    
T  4401112 caatttccataagctgtttttaacttattttcataagttctccaatataactta--aaacaacttatagcatatacgaaaataatttaacgt 4401023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 273 - 360
Target Start/End: Complemental strand, 39980793 - 39980705
Alignment:
Q  273 tttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaagaatttaacgt 360  Q
    ||||||||||| |||  |||||||||||| ||||||| |||| |||||||| ||||||||||| ||||| | |||||| ||||||||||    
T  39980793 tttcataagcttttttcaacttattttcataagttctccaatatagcttataaaaacaacttatagcatgttcaaaaacaatttaacgt 39980705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 358
Target Start/End: Complemental strand, 20257604 - 20257513
Alignment:
Q  269 caattttcataagctgtttcaaacttatttt-cacaagttcttcaatctagctt-ataaaacaacttaaagcatatacaaaaagaatttaac 358  Q
    ||||||||||||| | ||| ||||||||||| || ||| ||| |||| |||||| | ||||||||||| |||||||||||||| ||||||||    
T  20257604 caattttcataagttttttaaaacttatttttcataagctctccaatatagcttcaaaaaacaacttatagcatatacaaaaacaatttaac 20257513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 349
Target Start/End: Original strand, 18405836 - 18405914
Alignment:
Q  272 ttttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaa 349  Q
    ||||||||| || |||||| |||| ||||| ||||||| |||  |||||||| ||||||||||| ||||||||||||||    
T  18405836 ttttcataatctttttcaagcttaatttcataagttctccaagatagcttatgaaaacaacttatagcatatacaaaaa 18405914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 358
Target Start/End: Complemental strand, 20880544 - 20880454
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaagaatttaac 358  Q
    ||||||||||||||| |||  | |||||||||| ||||||| |||| |||||| | ||||||  ||| |||||||||||||| ||||||||    
T  20880544 caattttcataagcttttttgagcttattttcataagttctccaatatagcttttaaaaacagtttatagcatatacaaaaacaatttaac 20880454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 358
Target Start/End: Original strand, 35959458 - 35959548
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttata-aaacaacttaaagcatatacaaaaagaatttaac 358  Q
    ||||||||| ||||| |||  | |||||||||| || ||||  ||| ||||||||| |||||||||| |||||||||||||| ||||||||    
T  35959458 caattttcaaaagcttttttcagcttattttcaaaaattctctaatatagcttatagaaacaacttacagcatatacaaaaataatttaac 35959548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 357
Target Start/End: Complemental strand, 47132391 - 47132310
Alignment:
Q  277 ataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaagaatttaa 357  Q
    ||||||| |||  |||||||||||| || |||| |||| |||||||| |||||||| || |||||||||||||| |||||||    
T  47132391 ataagcttttttcaacttattttcataacttctccaatatagcttataaaaacaacctatagcatatacaaaaacaatttaa 47132310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 364
Target Start/End: Complemental strand, 30443961 - 30443865
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttataaaa-caacttaaagcatatacaaaaagaatttaacgtcatt 364  Q
    ||||||||| ||||| |||  | |||||||||| ||||||| |||| ||| |||||||| || |||| |||||||||||||  |||||||| |||||    
T  30443961 caattttcacaagcttttttcagcttattttcataagttctccaatatagtttataaaaacagcttatagcatatacaaaagcaatttaacttcatt 30443865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 272 - 342
Target Start/End: Original strand, 4526373 - 4526444
Alignment:
Q  272 ttttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatat 342  Q
    ||||||||||||||||  || ||||||||| |||||||||||  || ||||| ||||||||||| |||||||    
T  4526373 ttttcataagctgtttttaagttattttcataagttcttcaaaataacttataaaaacaacttatagcatat 4526444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 327
Target Start/End: Complemental strand, 35696311 - 35696248
Alignment:
Q  264 tttgtcaattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttataaaa 327  Q
    |||| ||| ||| ||||||| |||  |||||||||||||||||||| |||| ||||||||||||    
T  35696311 tttggcaaatttaataagcttttttcaacttattttcacaagttctccaatatagcttataaaa 35696248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 292 - 358
Target Start/End: Original strand, 36631076 - 36631143
Alignment:
Q  292 cttattttcacaagttcttcaatctagcttataaaa-caacttaaagcatatacaaaaagaatttaac 358  Q
    |||||||||| ||||||| |||| ||||| |||||| ||||||| ||||| |||||||| ||||||||    
T  36631076 cttattttcataagttctccaatatagctcataaaaacaacttatagcatgtacaaaaacaatttaac 36631143  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 359
Target Start/End: Original strand, 49034291 - 49034356
Alignment:
Q  295 attttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaagaatttaacg 359  Q
    ||||||| ||||||| |||| |||||||| ||||||||||| ||||||| || ||| |||||||||    
T  49034291 attttcagaagttctccaatatagcttataaaaacaacttatagcatatgcacaaacaatttaacg 49034356  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 367
Target Start/End: Complemental strand, 49556926 - 49556826
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagc-atatacaaaaagaatttaacgtcattat 366  Q
    ||||||||||||||| |||  ||||||||| | ||||| || || | |||| ||| ||||||||| ||||| ||||||||||| ||| |||| |||||||    
T  49556926 caattttcataagcttttttcaacttatttcctcaagtcctccagtatagcctataaaaacaactcaaagcgatatacaaaaacaatctaacatcattat 49556827  T
Q  367 t 367  Q
    |    
T  49556826 t 49556826  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 16457984 - 16458070
Alignment:
Q  272 ttttcataagctgtttcaaacttattttcacaagttcttcaatctagcttataaaa-caacttaaagcatatacaaaaagaatttaa 357  Q
    |||||||||||| |||  |  ||||||||||||||||| |||| ||||| |||||| ||||||| |||||||||||||| |||||||    
T  16457984 ttttcataagctcttttcagtttattttcacaagttctccaatttagctcataaaaacaacttatagcatatacaaaaacaatttaa 16458070  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 273 - 360
Target Start/End: Original strand, 16937889 - 16937977
Alignment:
Q  273 tttcataagctgtttcaaacttattttcacaagttcttcaatctagcttataaaa-caacttaaagcatatacaaaaagaatttaacgt 360  Q
    ||||||||||| |||  | |||||||||  ||||||| |||| |||| ||||||| ||||||| |||||||||||||| ||||||||||    
T  16937889 tttcataagcttttttcagcttattttcctaagttctccaatatagcgtataaaaacaacttatagcatatacaaaaacaatttaacgt 16937977  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 354
Target Start/End: Original strand, 6587114 - 6587195
Alignment:
Q  274 ttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaagaatt 354  Q
    ||||||||||||||  | |||||||||||||||||| || | |||||||| ||||||||||| ||| ||||| |||| ||||    
T  6587114 ttcataagctgtttacagcttattttcacaagttctccactatagcttatgaaaacaacttatagcttatacgaaaacaatt 6587195  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 324
Target Start/End: Original strand, 42500244 - 42500298
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttata 324  Q
    ||||||||||||||| |||||| |||||||||| ||||||| |||| |||||||||    
T  42500244 caattttcataagctttttcaa-cttattttcataagttctccaatatagcttata 42500298  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 359
Target Start/End: Complemental strand, 29925888 - 29925818
Alignment:
Q  290 aacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaagaatttaacg 359  Q
    |||||||||||| ||||||| |||| ||||||||  |||||||||| |||| ||||| ||| |||||||||    
T  29925888 aacttattttcataagttctccaatatagcttatgtaaacaacttatagcacatacagaaacaatttaacg 29925818  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 364
Target Start/End: Complemental strand, 32009761 - 32009664
Alignment:
Q  269 caattttcataa-gctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagcatatacaaaaagaatttaacgtcatt 364  Q
    |||||||||||| ||| |||  ||||| |||||| ||||||| |||| |||||||| ||||||| ||| ||||||||||| || |||| ||| |||||    
T  32009761 caattttcataaagcttttttgaacttgttttcataagttctccaatatagcttataaaaacaatttatagcatatacaagaacaattcaacttcatt 32009664  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 358
Target Start/End: Complemental strand, 12554561 - 12554497
Alignment:
Q  295 attttcacaagttcttcaatctagcttataaaa-caacttaaagcatatacaaaaagaatttaac 358  Q
    ||||||| | ||| |||||| ||| |||||||| ||||||| |||||||||||||| ||||||||    
T  12554561 attttcaaaggtttttcaatataggttataaaaacaacttatagcatatacaaaaacaatttaac 12554497  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 355
Target Start/End: Complemental strand, 6881971 - 6881908
Alignment:
Q  292 cttattttcacaagttcttcaatctagcttataaaacaacttaaagcatatacaaaaagaattt 355  Q
    |||||||||| ||||||| |||| |||||||||||||| |||| |||||||| ||||| |||||    
T  6881971 cttattttcataagttctccaatttagcttataaaacagcttatagcatatataaaaacaattt 6881908  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 359
Target Start/End: Complemental strand, 15180589 - 15180518
Alignment:
Q  289 aaacttattttcacaagttcttcaatctagcttata-aaacaacttaaagcatatacaaaaagaatttaacg 359  Q
    ||||||||||||| ||||||| |||| ||||||||| |||||||||| | ||| |||||||| |||||||||    
T  15180589 aaacttattttcagaagttctccaatatagcttatagaaacaacttataacatttacaaaaataatttaacg 15180518  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 358
Target Start/End: Original strand, 16825540 - 16825629
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttata-aaacaacttaaagcatatacaaaaagaatttaac 358  Q
    ||||||||||||||| |||| |||||||||||| ||||||  |||| |||||| || |||||||||| | | || ||||||| ||||||||    
T  16825540 caattttcataagctttttc-aacttattttcataagttcggcaatatagcttgtagaaacaacttataacgtaaacaaaaacaatttaac 16825629  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 357
Target Start/End: Complemental strand, 26771333 - 26771244
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttataaaacaa-cttaaagcatatacaaaaagaatttaa 357  Q
    ||||||||| ||||  |||  |||||||||||| |||||||  ||| || ||||||||| || |||| |||||||||||||| |||||||    
T  26771333 caattttcaaaagcctttttcaacttattttcataagttctctaatatatcttataaaaaaagcttatagcatatacaaaaacaatttaa 26771244  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 349
Target Start/End: Complemental strand, 11861871 - 11861791
Alignment:
Q  270 aattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttataaaa-caacttaaagcatatacaaaaa 349  Q
    |||||||| ||||| |||  ||| |||||||| |||||||  | | |||||||||||| ||||||| ||||||||||||||    
T  11861871 aattttcaaaagctttttttaacgtattttcataagttctctattatagcttataaaaacaacttatagcatatacaaaaa 11861791  T

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Target: scaffold0050 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 58810 - 58740
Alignment:
Q  269 caattttcataagctgtttcaaacttattttcacaagttcttcaatctagcttat-aaaacaacttaaagc 338  Q
    ||||||||||||||| |||  |||||| ||||| |||||||||||  |||||||| ||||||||| |||||    
T  58810 caattttcataagcttttttcaacttaatttcataagttcttcaacatagcttatgaaaacaactcaaagc 58740  T

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Target: scaffold0147 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 23678 - 23641
Alignment:
Q  290 aacttattttcacaagttcttcaatctagcttataaaa 327  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  23678 aacttattttcacaagttctccaatatagcttataaaa 23641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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