View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9293_low_14 (Length: 308)

Name: NF9293_low_14
Description: NF9293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9293_low_14
NF9293_low_14
[»] chr4 (18 HSPs)
chr4 (104-294)||(2546797-2546987)
chr4 (5-106)||(2547159-2547260)
chr4 (218-285)||(2547206-2547273)
chr4 (1-44)||(2625587-2625630)
chr4 (218-266)||(2621482-2621530)
chr4 (211-266)||(5106626-5106681)
chr4 (216-266)||(2367980-2368030)
chr4 (216-266)||(2518914-2518964)
chr4 (5-59)||(2546806-2546860)
chr4 (217-266)||(2391337-2391386)
chr4 (217-274)||(2471729-2471786)
chr4 (217-266)||(5035303-5035352)
chr4 (3-44)||(5106644-5106685)
chr4 (3-43)||(2367993-2368033)
chr4 (194-266)||(2381686-2381758)
chr4 (2-42)||(2391348-2391388)
chr4 (217-265)||(2467224-2467272)
chr4 (110-161)||(2546682-2546734)


Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 104 - 294
Target Start/End: Complemental strand, 2546987 - 2546797
Alignment:
Q  104 gtgatagatgatgatcgattcttgacacttcccaaaatccctaatatttgtttatatgttcacttctttgaagaatttcccgactctcaattgttctgag 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  2546987 gtgatagatgatgatcgattcttgacacttcccaaaatccctaatatttgtttatatgttaacttatttgaagaatttcccgactctcaattgttctgag 2546888  T
Q  204 attacttgtgtacacaagaatgatttattcttcattgttgattgttttcctttactcgaagaattcaccctgatggaagaattcaaccccc 294  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2546887 attacttgtgtacacaagaatgatttattcttcattgctgattgttttcctttactcgaagaattcaccctgatggaagaattcaaccccc 2546797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 2547260 - 2547159
Alignment:
Q  5 ttctttattgttgattgttcccctttactcgaagaactcaccctaatggaagaatacgctccctaccgttctatagctatttttagtagcagtgattttg 104  Q
    ||||| |||| |||||||| ||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  2547260 ttcttcattgctgattgtttccctttacttgaagaactcaccctaatggaagaatacactccccaccgttctatagctatttttagtagcagtgattttg 2547161  T
Q  105 tg 106  Q
    ||    
T  2547160 tg 2547159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 218 - 285
Target Start/End: Complemental strand, 2547273 - 2547206
Alignment:
Q  218 caagaatgatttattcttcattgttgattgttttcctttactcgaagaattcaccctgatggaagaat 285  Q
    ||||||||||||||||||||||| ||||||||| |||||||| |||||| ||||||| ||||||||||    
T  2547273 caagaatgatttattcttcattgctgattgtttccctttacttgaagaactcaccctaatggaagaat 2547206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 2625587 - 2625630
Alignment:
Q  1 aatcttctttattgttgattgttcccctttactcgaagaactca 44  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  2625587 aatcttctttattgttgattgtttccctttactcgaagaactca 2625630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 2621482 - 2621530
Alignment:
Q  218 caagaatgatttattcttcattgttgattgttttcctttactcgaagaa 266  Q
    |||||||||| |||||||| ||| ||||||||| |||||||||||||||    
T  2621482 caagaatgatctattcttccttgctgattgtttccctttactcgaagaa 2621530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 5106626 - 5106681
Alignment:
Q  211 gtgtacacaagaatgatttattcttcattgttgattgttttcctttactcgaagaa 266  Q
    ||||| |||||| |||| | |||||||||| ||||||||| |||||||||||||||    
T  5106626 gtgtagacaagagtgatctcttcttcattgctgattgtttccctttactcgaagaa 5106681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 2367980 - 2368030
Alignment:
Q  216 cacaagaatgatttattcttcattgttgattgttttcctttactcgaagaa 266  Q
    ||||||| |||| | |||||||||| ||||||||| |||||||||||||||    
T  2367980 cacaagagtgatctcttcttcattgctgattgtttccctttactcgaagaa 2368030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 2518964 - 2518914
Alignment:
Q  216 cacaagaatgatttattcttcattgttgattgttttcctttactcgaagaa 266  Q
    |||||||||||| | |||||||||| ||||||||| ||||||||| |||||    
T  2518964 cacaagaatgatctcttcttcattgctgattgtttccctttactcaaagaa 2518914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 2546860 - 2546806
Alignment:
Q  5 ttctttattgttgattgttcccctttactcgaagaactcaccctaatggaagaat 59  Q
    ||||| |||| ||||||||  ||||||||||||||| ||||||| ||||||||||    
T  2546860 ttcttcattgctgattgttttcctttactcgaagaattcaccctgatggaagaat 2546806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 2391337 - 2391386
Alignment:
Q  217 acaagaatgatttattcttcattgttgattgttttcctttactcgaagaa 266  Q
    ||||||| ||| | ||||||||||||||||| || |||||||||||||||    
T  2391337 acaagaaggatatcttcttcattgttgattgcttccctttactcgaagaa 2391386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 2471786 - 2471729
Alignment:
Q  217 acaagaatgatttattcttcattgttgattgttttcctttactcgaagaattcaccct 274  Q
    |||||||| || | ||||| || | ||||||||||||||||||||||||| |||||||    
T  2471786 acaagaatcatctcttcttgatagctgattgttttcctttactcgaagaactcaccct 2471729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 5035352 - 5035303
Alignment:
Q  217 acaagaatgatttattcttcattgttgattgttttcctttactcgaagaa 266  Q
    ||||||||||| | ||||| |||| ||||||||| |||||||||||||||    
T  5035352 acaagaatgatcttttcttgattgctgattgtttccctttactcgaagaa 5035303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 5106644 - 5106685
Alignment:
Q  3 tcttctttattgttgattgttcccctttactcgaagaactca 44  Q
    ||||||| |||| |||||||| ||||||||||||||||||||    
T  5106644 tcttcttcattgctgattgtttccctttactcgaagaactca 5106685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 2367993 - 2368033
Alignment:
Q  3 tcttctttattgttgattgttcccctttactcgaagaactc 43  Q
    ||||||| |||| |||||||| |||||||||||||||||||    
T  2367993 tcttcttcattgctgattgtttccctttactcgaagaactc 2368033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 2381686 - 2381758
Alignment:
Q  194 ttgttctgagattacttgtgtacacaagaatgatttattcttcattgttgattgttttcctttactcgaagaa 266  Q
    ||||||||| ||||||||  |  ||||||| ||||| || |||||||| ||||| || |||||||||||||||    
T  2381686 ttgttctgaaattacttggatcaacaagaaggatttcttattcattgtcgattgcttccctttactcgaagaa 2381758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 2391348 - 2391388
Alignment:
Q  2 atcttctttattgttgattgttcccctttactcgaagaact 42  Q
    |||||||| ||||||||||| | ||||||||||||||||||    
T  2391348 atcttcttcattgttgattgcttccctttactcgaagaact 2391388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 2467272 - 2467224
Alignment:
Q  217 acaagaatgatttattcttcattgttgattgttttcctttactcgaaga 265  Q
    ||||||| ||| | |||||||||| ||||||||| ||||||||||||||    
T  2467272 acaagaacgatcttttcttcattgctgattgtttccctttactcgaaga 2467224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 2546734 - 2546682
Alignment:
Q  110 gatgatgatcgattcttgacacttcccaaaatccc-taatatttgtttatatg 161  Q
    ||||||||||||||||||  ||||||||||||||| ||  |||||||||||||    
T  2546734 gatgatgatcgattcttggtacttcccaaaatcccgtagcatttgtttatatg 2546682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University