View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9293_low_17 (Length: 282)
Name: NF9293_low_17
Description: NF9293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9293_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 3 - 268
Target Start/End: Complemental strand, 47416891 - 47416626
Alignment:
| Q |
3 |
cagagacgactcaatgacacttactgaagtacttcttcaatctaggaggatcacattcacgtttgaggatatcgctcaaaagctcctcattacacctttc |
102 |
Q |
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| T |
47416891 |
cagagacgactcaatgacacttactgaagtacttcttcgatctaggaggatcacattcacgtttgaggatataactcaaaagctcctcataacacctttc |
47416792 |
T |
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| Q |
103 |
aaatttcaaacccgctggatttgagttctagttaaaggaaatttttggctcacccgcaacattgcaaaatagtaaaggatcaccagtaatacaagcaact |
202 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47416791 |
aaatttcaaacccgctggatttgagttctagttcaaggaaatttttggctcacccgcaacattgcaaaatagtaaaggatcaccagtaatacaagcaact |
47416692 |
T |
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| Q |
203 |
tttggaatttagattcaaaaagttcgtacaaactcagatttgttgaccactcattgaagaaataac |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47416691 |
tttggaatttagattcaaaaagttcgtacaaactcagatttgttgaccactcattgaagaaataac |
47416626 |
T |
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