View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9293_low_18 (Length: 269)
Name: NF9293_low_18
Description: NF9293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9293_low_18 |
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| [»] scaffold1089 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 25614464 - 25614670
Alignment:
| Q |
1 |
aaatgggttacttatgcaaaatagtcaaattatagaagagttatcctcatgtccaaggatttctccgggatgtaaactatcatttacccaggagtactta |
100 |
Q |
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| T |
25614464 |
aaatgggttacttatgcaaaatagtcaaattatagaagagttatcctcatgtccaaggatttctccgggatgtaaactatcatttacccaggagtactta |
25614563 |
T |
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| Q |
101 |
ctagaattatcagtgtgttccaattagtttctcatctaattatatgcaaccaattagattgatggtttggagaacatttagtcgtctagtaaaattgata |
200 |
Q |
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| T |
25614564 |
ctagagttatcagtgtgtttcaattagtttctcatctaattatatgcaaccaattagattgatggtttggagaacatttaatcgtctagtaaaattgata |
25614663 |
T |
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| Q |
201 |
agtataa |
207 |
Q |
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||||||| |
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| T |
25614664 |
agtataa |
25614670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 31262584 - 31262759
Alignment:
| Q |
17 |
caaaatagtcaaattatagaagagttatcctcatgtccaaggatttctccgggatgtaaactatcatttacccaggagtacttactagaattatcagtgt |
116 |
Q |
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| T |
31262584 |
caaaataggccaatcagagaagaattattctcatgtcgaaagatttcaacgagatgtagactattatttcaacagta-tagttactagaattatcagcgt |
31262682 |
T |
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| Q |
117 |
gttccaattagtttctcatctaattatatgcaaccaattagattgatggtttggagaacatttagtcgtctagtaaa |
193 |
Q |
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| T |
31262683 |
ttttcatttagtttataatctaattatatgcaaccaattaatttgatggtttggagaacatttactcttctagtaaa |
31262759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 32429410 - 32429344
Alignment:
| Q |
12 |
ttatgcaaaatagtcaaattatagaagagttatcctcatgtccaaggatttctccgggatgtaaact |
78 |
Q |
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| T |
32429410 |
ttatccaaaattatcaagttatagaagagttgtcctcttgtccaaggatgtctccgggatgtaaact |
32429344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 23940112 - 23940052
Alignment:
| Q |
25 |
tcaaattatagaagagttatcctcatgtccaaggatttctccgggatgtaaactatcattt |
85 |
Q |
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| T |
23940112 |
tcaaattatagaagaattatcctcctgtccaaggatgtctcctgaatgcaaactttcattt |
23940052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 24004920 - 24004879
Alignment:
| Q |
25 |
tcaaattatagaagagttatcctcatgtccaaggatttctcc |
66 |
Q |
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| T |
24004920 |
tcaaattatacaagagttatcctcctgtccaaggatgtctcc |
24004879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 14438209 - 14438148
Alignment:
| Q |
23 |
agtcaaattatagaagagttatcctcatgtccaaggatttctccgggatgtaaactatcatt |
84 |
Q |
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| T |
14438209 |
agtcaaattatagaagaattatcctcttgtccaaggatttctccagcatgtaaactttcatt |
14438148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 14435544 - 14435489
Alignment:
| Q |
23 |
agtcaaattatagaagagttatcctcatgtccaaggatttctccgggatgtaaact |
78 |
Q |
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| T |
14435544 |
agtcaaattatagaagaattatcttcttgtccaaggatatctcctgcatgtaaact |
14435489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1089 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1089
Description:
Target: scaffold1089; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 572 - 521
Alignment:
| Q |
27 |
aaattatagaagagttatcctcatgtccaaggatttctccgggatgtaaact |
78 |
Q |
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| T |
572 |
aaattatagaagaattgtcctcttgtccaaggatttctccagcatgtaaact |
521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 40921338 - 40921387
Alignment:
| Q |
209 |
gctgtttctgtctttgtttttgggggtttgctgctgtttgtgctgatgatg |
259 |
Q |
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| T |
40921338 |
gctgtttctgtcattgtttttggggg-tagctgctgtttgtgctgctgatg |
40921387 |
T |
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