View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9293_low_2 (Length: 583)
Name: NF9293_low_2
Description: NF9293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9293_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 19 - 572
Target Start/End: Original strand, 1055856 - 1056405
Alignment:
| Q |
19 |
tgtttttcgttgtatcaactgttaaattttccttagttctcttcggacacttcttgtgccagggagactaagtttattggttattatattccattttaac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1055856 |
tgtttttcgttgtatcaactgttaaattttccttagttctcttcggacacttcttgtgccagggagactaagtttattggttattatattccattttaac |
1055955 |
T |
|
| Q |
119 |
ttcttnnnnnnnnnnnnnnnngatcaaaccgaggagcttcaaatcggttttaactaaagttcgttaattgtttgagttcaaccacttggttaaactattt |
218 |
Q |
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| T |
1055956 |
ttcttaaaaaaaaaaaa----gatcaaaccgaggagcttcaaatcagttttaactaaagtttgttaattgtttgagttcaaccacttggttaaactattt |
1056051 |
T |
|
| Q |
219 |
actacgcacacatttagttaatattttttaacaaaattgaataaagatataaagaaaattggatgataaataaatacaagccttactaaacaaactacat |
318 |
Q |
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|||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1056052 |
actacgcacacattaagttaattttttataacaaaattgaataaagatataaagaaaattggatgataaataaatacaagccttactaaacaaactacat |
1056151 |
T |
|
| Q |
319 |
attacccatgtgagacaccacatcatagacccctaaaaagcatatcaactcctaagacaaagaaatgccaaatcttaggacataaggcatgccatgattt |
418 |
Q |
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| T |
1056152 |
attacccatgtgagacaccacatcatagacccctaaaaagcatatcaactcctaagagaaagaaatgccaaatcttaggacataaggcatgccatgattt |
1056251 |
T |
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| Q |
419 |
ttatctaattctcactagagcacctaattggcctagacatgagtctgcataacttgttattcgatagttcatatctttgcaaagaaatgtttgatgcatc |
518 |
Q |
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| T |
1056252 |
tcatctaattctcactagagcacctaattggcctagacatgagtctgcataacttgttattcgatagttcatatctttgcaaagaaatgtttgatgcatc |
1056351 |
T |
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| Q |
519 |
tccacatatcttttctttaggcattccaatatcctttgctagcttctctgcttc |
572 |
Q |
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| T |
1056352 |
tccacatatcttttctttaggcattccaatatcctttgctagcttctctgcttc |
1056405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 53635239 - 53635340
Alignment:
| Q |
22 |
ttttcgttgtatcaactgttaaattttccttagttctcttcggacacttcttgtgccagggagactaagtttattggttattatattccattttaacttc |
121 |
Q |
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|||| ||| |||||||| |||||||||||||||||||||| | ||||||| ||| || |||||||||||| ||||||||||||| ||||||| |||| |
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| T |
53635239 |
tttttgttttatcaactattaaattttccttagttctcttatgtcacttctcgtgatagagagactaagtttcttggttattatatatcattttagcttc |
53635338 |
T |
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| Q |
122 |
tt |
123 |
Q |
| |
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|| |
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|
| T |
53635339 |
tt |
53635340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 12955013 - 12954933
Alignment:
| Q |
28 |
ttgtatcaactgttaaattttccttagttctcttcggacacttcttgtgccagggagactaagtttattggttattatatt |
108 |
Q |
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|||||||||| |||||||||||||| || |||| |||||||||||||| || | |||||||||| |||||||||||||| |
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| T |
12955013 |
ttgtatcaacagttaaattttcctttattatcttttgacacttcttgtgctagagggactaagtttcttggttattatatt |
12954933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 24598873 - 24598833
Alignment:
| Q |
82 |
gagactaagtttattggttattatattccattttaacttctt |
123 |
Q |
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| T |
24598873 |
gagactaagtttct-ggttattatattccattttaacttctt |
24598833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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