View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9293_low_23 (Length: 254)
Name: NF9293_low_23
Description: NF9293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9293_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 14984492 - 14984719
Alignment:
| Q |
20 |
attcccatatcagtacgttcagcataccatctcttgtgcaccaacnnnnnnn-cctctgtccaggtccatcaaccgacagagatggtaaattatggaatg |
118 |
Q |
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| T |
14984492 |
attcccatatcagtacgttcagcataccatctcttgtgcaccaacaaagaaaacctccgtccaggtccatcaaccgacagggatggtaaattatggaatg |
14984591 |
T |
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| Q |
119 |
atgtttggaaggctcctatcccaaacaagatcaaaacttttatgtggagacttgctaaaaacattctgcccactagagcaaatctcc-nnnnnnnggtat |
217 |
Q |
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| T |
14984592 |
atatttggaaggctcctatcccaaacaagatcaaaacttttatgtggagacttgctaaaaacattctgcccactagagcaaatctccaaaaaaaaggtat |
14984691 |
T |
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| Q |
218 |
tcatttagacactgtatgccctctctgc |
245 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
14984692 |
tcatttagacactgtatgccctctctgc |
14984719 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 24553514 - 24553445
Alignment:
| Q |
136 |
atcccaaacaagatcaaaacttttatgtggagacttgctaaaaacattctgcccactagagcaaatctcc |
205 |
Q |
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||||||||||| ||||||| || |||||||| |||||||| || ||| ||||||||||| ||||||||| |
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| T |
24553514 |
atcccaaacaaaatcaaaaacttcatgtggaggcttgctaagaatattttgcccactagatcaaatctcc |
24553445 |
T |
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